Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,940,189 – 9,940,303 |
Length | 114 |
Max. P | 0.992765 |
Location | 9,940,189 – 9,940,303 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.45 |
Mean single sequence MFE | -30.27 |
Consensus MFE | -27.80 |
Energy contribution | -28.30 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.60 |
Structure conservation index | 0.92 |
SVM decision value | 2.35 |
SVM RNA-class probability | 0.992765 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9940189 114 - 22224390 CAG------CAACAAAAACGAAGCCAACACAAUUCGUAGGGCCAAAACGUAAUCUCUUUUGCAGCCCCAAGGGGCGAACAUGGGUUAAAACGAAAGUGAACCCAGCCCCCCAUAUCGUCA ...------........(((((..........))))).((((......((((......)))).((((....)))).....((((((...((....)).))))))))))............ ( -33.60) >DroSec_CAF1 9900 120 - 1 CAGUAACAGCAAAAAAAACGAAGCCAACACAAUUCGUAGGGCCAAAACGUAAUCUCUUUUGCAGCCCCGAGGGUCGAACAUGGGUUAAAACGAAAGUGAACCCAGCCCCCCAUAUCGUCA .................((((............(((..(((((((((.(......))))))..)))))))(((..(....((((((...((....)).)))))).)..)))...)))).. ( -29.90) >DroEre_CAF1 9623 114 - 1 CAA------CAACAGAAACGAAGCAAACACAAUUCGUAGGGCCAAAACGUAAUCUCUUUUGUAGCCCCGAGGGGCGAACAUGGGUUAAAACGAAAGUGAACCCAACCCCCCAUAUCGUCA ...------........((((............(((..(((((((((.(......))))))..)))))))((((.(....((((((...((....)).))))))..)))))...)))).. ( -31.10) >DroYak_CAF1 10024 114 - 1 CAA------CAACAAAAACGAACCAGACACAAUUCGUAGGGCCAAAACGUAAUCUCUUUUGUAGCCCCGAGGGCCGAACAUGGGUUAAAACGAAAGUGAACCCAACCCCCCGUAUCGCCA ...------................((.((...(((..(((((((((.(......))))))..)))))))(((.......((((((...((....)).))))))....))))).)).... ( -26.50) >consensus CAA______CAACAAAAACGAAGCAAACACAAUUCGUAGGGCCAAAACGUAAUCUCUUUUGCAGCCCCGAGGGGCGAACAUGGGUUAAAACGAAAGUGAACCCAACCCCCCAUAUCGUCA .................(((((..........))))).(((((((((.(......))))))..))))...((((.(....((((((...((....)).)))))).).))))......... (-27.80 = -28.30 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:55 2006