Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,881,243 – 9,881,335 |
Length | 92 |
Max. P | 0.651441 |
Location | 9,881,243 – 9,881,335 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 79.06 |
Mean single sequence MFE | -29.85 |
Consensus MFE | -16.72 |
Energy contribution | -19.20 |
Covariance contribution | 2.48 |
Combinations/Pair | 1.17 |
Mean z-score | -1.83 |
Structure conservation index | 0.56 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9881243 92 - 22224390 GCUGCUAGCUGCUUCAGUGGUCCUAGUUCUAAAGAAAGAACGACGUGUUGUAGUUUCAGUAGAUAUCUGGGCAUCACUGUCUGCUUCAGUUG ((((..(((.....((((((((((((.((((..((((..((((....))))..))))..))))...))))).)))))))...))).)))).. ( -32.20) >DroSec_CAF1 12598 92 - 1 GCUGCUAGCUGCUUCAGUGAUCCUAGUUCUAAAGAAAGAACGACGUGUUGGACCUUCAGUAGAUAUCUGGGCAUCACUGUCUGCUUCAGUGG ((((..(((.....((((((((((((.((((..(((.(..(((....)))..).)))..))))...))))).)))))))...))).)))).. ( -31.80) >DroSim_CAF1 11157 92 - 1 GCUGCUAGCUGUUUCAGUGGUCCUAGUUCUAAAGAAAGAACGACGUGUUGGACCUUCAGUAGAUAUCUGGGCAUCACUGUGUGGUUCAGUGG .(..(((((..(..((((((((((((.((((..(((.(..(((....)))..).)))..))))...))))).))))))).)..))).))..) ( -31.20) >DroEre_CAF1 21171 92 - 1 GCUGCUAGCUGCUUCAGUGGUCCUAGUUCUAAAGAAAGAACGACGUGUUGCACCUUCGGUAGAUAGCUGGGCUUCACUGUCUGCUUCAGUGG ((((..(((.....((((((.((((((((((..(((.(..(((....)))..).)))..))))..))))))..))))))...))).)))).. ( -29.10) >DroYak_CAF1 4762 92 - 1 GCUGCUAGCGUCUUCAGUGGUCCUAGUUCUAAAGAAGGAACGACGUGUCGGACCUUCGGUAGAUAUCUGAGCUUCACUGUCAGCUUCAGUGG ((((..(((.....((((((..((((.((((..(((((..(((....)))..)))))..))))...)).))..))))))...))).)))).. ( -33.60) >DroAna_CAF1 81327 82 - 1 ----------UCUUCAGUGAUGCCAUGUCUAAGGAAAGAAGGUCGGUUGGUGGCCUCGGUUGAUGUGCUAUCAUCGGUCAAAGCUUCACCAG ----------......((((.((....(((......))).(..((((.(((((((((....)).).))))))))))..)...)).))))... ( -21.20) >consensus GCUGCUAGCUGCUUCAGUGGUCCUAGUUCUAAAGAAAGAACGACGUGUUGGACCUUCAGUAGAUAUCUGGGCAUCACUGUCUGCUUCAGUGG ((((..(((.....((((((((((((.((((..(((....(((....)))....)))..))))...))))).)))))))...))).)))).. (-16.72 = -19.20 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:12 2006