Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,880,653 – 9,880,758 |
Length | 105 |
Max. P | 0.951433 |
Location | 9,880,653 – 9,880,758 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 84.55 |
Mean single sequence MFE | -38.12 |
Consensus MFE | -29.30 |
Energy contribution | -30.05 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.15 |
Mean z-score | -2.32 |
Structure conservation index | 0.77 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951433 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9880653 105 - 22224390 UCAGCGCCUAGA------CUGGCUUCUUCAGCGACGAUAUCCAAGUCUGCGGUGCUGCUGGAGCUUUCUUCAGUGGUGCUGCUUACAGAUUGUUCCGUAGAACUGCUGACA ((((((((....------..)))((((...(.((((((......((..((((..(..((((((....))))))..)..))))..))..)))))).)..))))..))))).. ( -40.00) >DroSec_CAF1 12011 105 - 1 UCAGCGUCUAGA------UUGGCUUCUUCAACGAGGGUAUUCAAAUCUGCGGUGCUGCUGGAGCUUUCUUCAGUGGUGCUGCUUACUGAUUGUUCCGAAGAACUGCCGACA ............------(((((...(((..((.(..((.(((.....((((..(..((((((....))))))..)..))))....))).))..)))..)))..))))).. ( -36.80) >DroEre_CAF1 20587 111 - 1 UCUGCGCCCAGAUGGUCGUUGGCUUCUUCAACGACAGUAUUCAAUUCUGCGGCGCUGCUGGCGUUUUCUUCAGUGGUGCUGCUUACAGAUUCUUCCGAAGAACUGCUGACA ...(((((((((..((((((((.....))))))))..........)))).))))).(..((((..((((((.(.((..(((....)))...)).).)))))).))))..). ( -36.60) >DroYak_CAF1 4184 111 - 1 UCUGCGCUCAGAUGUUCGUUGGCUUCUUCAACGACAGUGUUCAAUUCUGCGGUGCUGCUGAUGCUUUCUUCGGUGGUGCUGCUUACAGAUGCUUCUGAAGAACUGCUGACA ((((....))))...(((((((.....)))))))((((((((......((((..(..((((........))))..)..))))...((((....))))..)))).))))... ( -39.10) >consensus UCAGCGCCCAGA______UUGGCUUCUUCAACGACAGUAUUCAAUUCUGCGGUGCUGCUGGAGCUUUCUUCAGUGGUGCUGCUUACAGAUUCUUCCGAAGAACUGCUGACA .................((((((((((((...................(((((((..((((((....))))))..))))))).....((....)).))))))..)))))). (-29.30 = -30.05 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:11 2006