Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,875,446 – 9,875,555 |
Length | 109 |
Max. P | 0.500000 |
Location | 9,875,446 – 9,875,555 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 71.35 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -17.41 |
Energy contribution | -17.25 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.22 |
Mean z-score | -0.84 |
Structure conservation index | 0.68 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9875446 109 + 22224390 -AAUUGUCGUAAUUCG------CUAAUGUUC--UUUUUCCUUCAUUGCAGUUCCGGCGUGGAGCGGCCUGGCAAACGCUCUUCCUGCUCUGCGCUCUCGCCUAUUGCAUAAAUGGUAG -.((((.((.....))------.))))....--.....((.....((((((..(((((..((((((...(((....)))....))))))..)))...))...)))))).....))... ( -29.00) >DroPse_CAF1 8249 87 + 1 -------------------------------CUUUUGAUUUUCAUUGCAGUUCCGGCGUGGAGCGGCCUGGCAAACGCUCUUCCUGCUCUGCGCACUCGCAUAUUGCAUAAAUGGUAA -------------------------------..........((((((((((..(((((..((((((...(((....)))....))))))..)))...))...))))))...))))... ( -26.90) >DroGri_CAF1 15822 96 + 1 ------U----AUUGU----UUU------UC-CUU-UAUUCCCGUUACAGUUACGGCCUGGAGCGGCCUGGCAAACGCUCUUCCUUCUCUGCGCGUUGGCUUAUUGCAUCAAUGGUGA ------.----.....----...------..-...-...(((((((...((((.((((......)))))))).(((((.(..........).))))).((.....))...))))).)) ( -20.70) >DroMoj_CAF1 25078 94 + 1 ------U----AUUAU------U------UC-UAU-UGCUUCGCUUACAGUUCCGGCGUGGAGCGACCUGGCAAACCCUCUUUCUCCUCUGCGCACUAGCCUACUGUAUCAAUGGUAA ------.----.....------.------..-..(-((((.....((((((...(((.(((.(((....((..((......))..))....))).)))))).)))))).....))))) ( -21.50) >DroAna_CAF1 75204 101 + 1 -AAUUAU----AUUCG------AU----UUA--UUUGUUGUCCAUUGCAGUUCCGGCGUGGAGCGGCUUGGCAAAUGCUCUUCCUUCUCUGCGCACUCGCCUAUUGCAUUAAUGGUAA -......----...((------((----...--...)))).((((((((((..(((((..(((.((...(((....)))...))..)))..)))...))...))))))...))))... ( -24.50) >DroPer_CAF1 8390 116 + 1 CAAUUAUUAAAAAACGGUUC--CUCUUGGUCCUUUUGAUUUUCAUUGCAGUUCCGGCGUGGAGCGGCCUGGCAAACGCUCUUCCUGCUCUGCGCACUCGCAUAUUGCAUAAAUGGUAA ..((((((.......((..(--(....)).)).............((((((..(((((..((((((...(((....)))....))))))..)))...))...))))))..)))))).. ( -31.00) >consensus ______U____AUUCG______C______UC_UUUUGAUUUCCAUUGCAGUUCCGGCGUGGAGCGGCCUGGCAAACGCUCUUCCUGCUCUGCGCACUCGCCUAUUGCAUAAAUGGUAA .........................................((((((((((....((((((((.((...(((....)))...))..))))))))........))))))...))))... (-17.41 = -17.25 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:10 2006