Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,859,517 – 9,859,636 |
Length | 119 |
Max. P | 0.660325 |
Location | 9,859,517 – 9,859,636 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.69 |
Mean single sequence MFE | -21.86 |
Consensus MFE | -13.19 |
Energy contribution | -15.32 |
Covariance contribution | 2.13 |
Combinations/Pair | 1.17 |
Mean z-score | -1.77 |
Structure conservation index | 0.60 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9859517 119 - 22224390 GGUGUGGGUGGUGGUAAGAAGUACAAA-AAAUAUAUAUAAAGACUAUAAAGACUGCCAUGUGGGAAAAUAGUUUAUAAAGCUAUUUUCUGGAUUAAAAGAUUACAGAAAAUCUUUAAACA .......((((..((....(((.....-..............)))......))..)))).(.(((((((((((.....))))))))))).)....(((((((......)))))))..... ( -22.21) >DroSec_CAF1 4413 119 - 1 -GAGUGGGUGGUGGUAAGAAGUACAAAUAUAUAUAUAUAAAGACUAUAAAGACUGCCAUGUGGGAAAAUAGUUUAUAAAGCUAUUUUCUGGAUUAAAAGAUUACAGCAAAUCUUUAAACA -......((((..((....(((....((((....))))....)))......))..)))).(.(((((((((((.....))))))))))).)....(((((((......)))))))..... ( -24.60) >DroSim_CAF1 3714 119 - 1 -GAGUGGGUGGUGGUAAGAAGUACAAAUAUAUAUAUAUAAAGACUAUAAAGACUGCCAUGUGGGAAAAUAGUUUAUAAAGCUAUUUUCUGGAUUAAAAGAUUACAGCAAAUCUUUAAACA -......((((..((....(((....((((....))))....)))......))..)))).(.(((((((((((.....))))))))))).)....(((((((......)))))))..... ( -24.60) >DroEre_CAF1 4260 100 - 1 -------------GGGAAAAGUGCAUAUAUGUGUG-------ACUAUAAAGACUGCCAUGUGGGAAAAUAGUUCAUAAAGCUAUUUUCUGGAUUAAGGGAUUACAAAAAAUCUUUAAACA -------------.((...(((((((....)))).-------.((....))))).))...(.(((((((((((.....))))))))))).)....(((((((......)))))))..... ( -17.50) >DroYak_CAF1 3735 103 - 1 GGUGUGGGUGGUAGUAAAAAGUAGGUAUAUGUACAUA-----UAUACAAAGACUGCCAAGUGGGAAAAUAGU------------UUUCUGGAUUAAAAGAUUACAGCCAAUCUAUAAGCA ..((((((((((.((((..(((..(((((((....))-----)))))....))).(((...(..((.....)------------)..)))).........)))).))).))))))).... ( -20.40) >consensus _GAGUGGGUGGUGGUAAGAAGUACAAAUAUAUAUAUAUAAAGACUAUAAAGACUGCCAUGUGGGAAAAUAGUUUAUAAAGCUAUUUUCUGGAUUAAAAGAUUACAGCAAAUCUUUAAACA .......((((((((.....(((.....................)))....)))))))).(.(((((((((((.....))))))))))).)....(((((((......)))))))..... (-13.19 = -15.32 + 2.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:54 2006