Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,840,564 – 9,840,656 |
Length | 92 |
Max. P | 0.515285 |
Location | 9,840,564 – 9,840,656 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 86.03 |
Mean single sequence MFE | -18.23 |
Consensus MFE | -13.71 |
Energy contribution | -13.90 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -1.40 |
Structure conservation index | 0.75 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9840564 92 + 22224390 UAGCUCUCAAGAAGAGAUGCGGCUGGAAAAAAUCGGUGAAAAUCGAAGAAAAAUGUGUAUAAAUAAGCGAAGCUGUGGACAAUUUUCUUUGC ..((((((.....)))).)).(((((......)))))......(((((((((.(((.((((............)))).))).))))))))). ( -20.40) >DroSec_CAF1 2232 81 + 1 UAGCUCUCAAGAAGAGAUAGGGCUGGAAA-----------AAUCGGAGAAAAAUGUAUAUAAAUAAGCGAAGCUGUGGACAAUUUUCUUUGC (((((((...........)))))))....-----------...(((((((((.(((...((....(((...))).)).))).))))))))). ( -15.80) >DroSim_CAF1 2450 81 + 1 UAGCUCUCAAGAAGAGAUGGGGCUGGAAA-----------AAUCGGAGAAAAAUGUAUAUAAAUAAGCGAAGCUGUGGACAAUUUUCUUUGC ((((((.((........))))))))....-----------...(((((((((.(((...((....(((...))).)).))).))))))))). ( -16.60) >DroEre_CAF1 2245 89 + 1 UAGCUCUCGAGAAGAGAUGGGUCUGAAAA--AUCGGCGAACAUCGCAGAGAAAUGUAUAUAAAUA-GCGAAGCUGUGGACAAUUUUCUUUGC ...............((((..(((((...--.)))).)..))))((((((((((((......(((-((...)))))..)))..))))))))) ( -20.10) >consensus UAGCUCUCAAGAAGAGAUGGGGCUGGAAA___________AAUCGGAGAAAAAUGUAUAUAAAUAAGCGAAGCUGUGGACAAUUUUCUUUGC ((((((((.....))))....))))..................(((((((((.(((.((((............)))).))).))))))))). (-13.71 = -13.90 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:47 2006