Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,835,978 – 9,836,068 |
Length | 90 |
Max. P | 0.696717 |
Location | 9,835,978 – 9,836,068 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 95.81 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -19.30 |
Energy contribution | -19.50 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.32 |
Structure conservation index | 0.88 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9835978 90 - 22224390 GCCCCC-AAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUUCGGAUAUAUGAGGGAUUUCGAAAUAUAAUUUAAGCCAAGUGACUGG ....((-(...(((......(.....)..(((((((((...((((((((............))))))))...)))))))))..)))..))) ( -22.40) >DroSec_CAF1 14736 91 - 1 GCCCCCUAAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUUCGGAUAUCUGAGGGAUUUUGAAAUAUAAUUUAAGCCAAAUGACUGG ................(((((.....)..(((((((((...((((((((.(((.....)))))))))))...)))))))))....).))). ( -21.20) >DroSim_CAF1 13361 91 - 1 GCCCCCUAAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUUCGGAUAUCUGAGGGAUUUUGAAAUAUAAUUUAAGCCAAAUGACUGG ................(((((.....)..(((((((((...((((((((.(((.....)))))))))))...)))))))))....).))). ( -21.20) >DroEre_CAF1 12781 90 - 1 GCCCCC-AAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUACGGAUAUCUGAGGGAUUUCGAAAUAUAAUUUAAGCCAAGUGAUUGG ......-...............((((((.(((((((((...(((.((((.(((.....))))))).)))...)))))))))...)))))). ( -21.50) >DroYak_CAF1 15201 90 - 1 GCCCCC-AAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUUCGGAUAACUGAGGGAUUUCGAAAUGUAAUUUAAGCCAAGUGACUGG ....((-(...(((......(.....)..(((((((((.(.((((((((...(....)...)))))))).).)))))))))..)))..))) ( -23.20) >consensus GCCCCC_AAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUUCGGAUAUCUGAGGGAUUUCGAAAUAUAAUUUAAGCCAAGUGACUGG ................(((((.....)..(((((((((...((((((((.(((.....)))))))))))...)))))))))....).))). (-19.30 = -19.50 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:38 2006