Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,832,453 – 9,832,564 |
Length | 111 |
Max. P | 0.599113 |
Location | 9,832,453 – 9,832,564 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 86.01 |
Mean single sequence MFE | -30.37 |
Consensus MFE | -23.67 |
Energy contribution | -24.23 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.87 |
Structure conservation index | 0.78 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599113 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9832453 111 + 22224390 CUGAUUUCGAACGCAUGCAACUUUUAGUGAGUUAGUUUAGUGAGUCUCACUAGUCGACCGACCGACUGACUGAUUUUGGCUCGCCUGCCUUCGCAUUUGCUAUUGCUUUGC------- ........(((.(((.((.((.....))(((((((.(((((.((((......(((....))).)))).)))))..))))))))).))).)))(((...((....))..)))------- ( -30.30) >DroSec_CAF1 11278 111 + 1 CUGAUUUCGAACGCAUGCAACUUUUAGUGAGUUAGUUUAGUGAGUCUCACUAGUC-------UGACUGACUGAUUUUGGCUGGCCUGCCUUCGCAUUUGCUAUUGCUUUGCUUUUGCU ........(((.(((.((..((.(((((.((((((.((((((.....)))))).)-------))))).)))))....))...)).))).)))(((...((....))..)))....... ( -34.20) >DroEre_CAF1 9317 103 + 1 CUGAUUUCGAACGCAUGCAACUUUUAGUCAGUUUGCUUAGUGAGUCUCACCAGUCGAC----CGACUGACUGAUUUUGGCUCGCCUGCCUUCGCAUUUGCUAUUGCU----------- ........(((.(((.((..((...(((((((.......(((.....)))(((((...----.))))))))))))..))...)).))).)))(((........))).----------- ( -26.60) >consensus CUGAUUUCGAACGCAUGCAACUUUUAGUGAGUUAGUUUAGUGAGUCUCACUAGUCGAC____CGACUGACUGAUUUUGGCUCGCCUGCCUUCGCAUUUGCUAUUGCUUUGC_______ ........(((.(((.(((((((.....))))).))...((((((((((.((((((......))))))..)))....))))))).))).)))(((........)))............ (-23.67 = -24.23 + 0.56)
Location | 9,832,453 – 9,832,564 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 86.01 |
Mean single sequence MFE | -27.13 |
Consensus MFE | -22.19 |
Energy contribution | -22.64 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.62 |
Structure conservation index | 0.82 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9832453 111 - 22224390 -------GCAAAGCAAUAGCAAAUGCGAAGGCAGGCGAGCCAAAAUCAGUCAGUCGGUCGGUCGACUAGUGAGACUCACUAAACUAACUCACUAAAAGUUGCAUGCGUUCGAAAUCAG -------(((..(((((.((...(((....))).))(((.............(((((....)))))(((((.....)))))......))).......))))).)))............ ( -27.90) >DroSec_CAF1 11278 111 - 1 AGCAAAAGCAAAGCAAUAGCAAAUGCGAAGGCAGGCCAGCCAAAAUCAGUCAGUCA-------GACUAGUGAGACUCACUAAACUAACUCACUAAAAGUUGCAUGCGUUCGAAAUCAG .......(((..(((((.((...(((....))).))...........(((.(((.(-------(..(((((.....)))))..)).))).)))....))))).)))............ ( -25.10) >DroEre_CAF1 9317 103 - 1 -----------AGCAAUAGCAAAUGCGAAGGCAGGCGAGCCAAAAUCAGUCAGUCG----GUCGACUGGUGAGACUCACUAAGCAAACUGACUAAAAGUUGCAUGCGUUCGAAAUCAG -----------.(((((.((...(((....))).))...........(((((((..----((....(((((.....))))).))..)))))))....)))))................ ( -28.40) >consensus _______GCAAAGCAAUAGCAAAUGCGAAGGCAGGCGAGCCAAAAUCAGUCAGUCG____GUCGACUAGUGAGACUCACUAAACUAACUCACUAAAAGUUGCAUGCGUUCGAAAUCAG ............((....)).....((((.(((.((.(((............((((......))))(((((((..............)))))))...))))).))).))))....... (-22.19 = -22.64 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:35 2006