Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,832,101 – 9,832,220 |
Length | 119 |
Max. P | 0.548426 |
Location | 9,832,101 – 9,832,220 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.78 |
Mean single sequence MFE | -38.76 |
Consensus MFE | -28.44 |
Energy contribution | -28.80 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.62 |
Structure conservation index | 0.73 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9832101 119 + 22224390 CCUUAAGUAGUUAAGAACUUCUGGCUUAGUCUCGUGCUGAGCAGUUGCCC-CUUUUGGUGUUCGGGUUCAAAUAGAACAUCUUAUGCAAAUUGCGAACGCCCAUAUGGGCGUGGCAAAGU .(((((....))))).((((...(((((((.....))))))).((..(((-(....(((((((..((((.....)))).......((.....))))))))).....))).)..)).)))) ( -36.70) >DroSec_CAF1 10935 119 + 1 CCUUAAGUAGUUAAGAACUUCUGGCUUUGUCUCGUGCUGAGCAGUUGAAC-CUUUUGGUGUUCGGGUUCAAAUAGAAGAUCUUAUGCAAAUUGCGAACGCCCAUAUGGGCGUGGCAACGU ......(((..(((((.((((((((((.((.....)).))))..((((((-((..........)))))))).)))))).))))))))...((((..((((((....)))))).))))... ( -39.90) >DroSim_CAF1 9860 119 + 1 CCUUAAGUAGUUAAGAAUUUCUGGCUUUGUCUCGUGCUGAGCAGUUGAAC-CUUUUGGUGUUCGGGUUCAAAUAGAAGAUCUUAUGCAAAUUGCGAACGCCCAUAUGGGCGUGGCAUCGU ......(((..(((((.((((((((((.((.....)).))))..((((((-((..........)))))))).)))))).))))))))....(((..((((((....)))))).))).... ( -36.90) >DroEre_CAF1 8972 120 + 1 CUCGAAGCAGUUAAGAACUUCUAGCUUUGUCUCCGGCUGAGCAGCUGACCCCAUUUGGUGUUCGGGUUCAGAUAGAAGAUCGUAUGCAAAUUGCGAACGCCCACAUGGGCGUGGCACCGC ......(((.....((.((((((((((.((.....)).))))..((((.(((...........))).)))).)))))).))...)))....(((..((((((....)))))).))).... ( -41.10) >DroYak_CAF1 11131 119 + 1 CUUUGAGUACUUAAGAACCUGUAGCUUUGUCUUGGGCUGAGCAGUUGCCC-CCUUUGGUGUUCGGGUUCAAAUAGAAGAUCGUAUGCAAAUUGCGUACGCCCACAUGGGCGUGGCAGCAU .((((.((((....(((((((..(((.......((((.........))))-.....)))...))))))).....(.....))))).))))((((.(((((((....)))))))))))... ( -39.20) >consensus CCUUAAGUAGUUAAGAACUUCUGGCUUUGUCUCGUGCUGAGCAGUUGACC_CUUUUGGUGUUCGGGUUCAAAUAGAAGAUCUUAUGCAAAUUGCGAACGCCCAUAUGGGCGUGGCAACGU ......(((..(((((.((((((..((((.......(((((((.(...........).)))))))...)))))))))).))))))))....(((..((((((....)))))).))).... (-28.44 = -28.80 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:33 2006