Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,827,706 – 9,827,808 |
Length | 102 |
Max. P | 0.995927 |
Location | 9,827,706 – 9,827,808 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 96.07 |
Mean single sequence MFE | -23.22 |
Consensus MFE | -20.96 |
Energy contribution | -21.36 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.90 |
SVM decision value | 2.63 |
SVM RNA-class probability | 0.995927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9827706 102 - 22224390 UUUGAAGGCUAAAUGCAAGAUUUGAUCGGAAUUUAAACAGUUUUAACAUGUUUGGCUUAUGUUAUAU-UUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA ....(((((...((((.......(((((.....((((((.((((((((((.......)))))))...-..))).)))))).....)))))...))))))))). ( -19.20) >DroSec_CAF1 4089 101 - 1 UUUGAAGGCUAAAUGCAAGAU-UGAUCGGAAUUUAAACACUUUUAACAUGUUUGGCUUAUGUUAUAU-UUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA ....(((((...((((.....-.(((((.....(((((((((((((((((.......)))))))...-..)))))))))).....)))))...))))))))). ( -23.70) >DroSim_CAF1 5338 101 - 1 UUUGAAGGCUAAAUGCAAGAU-UGAUCGGAAUUUAAACACUUUUAACAUGUUUGGCUUAUGUUAUAU-UUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA ....(((((...((((.....-.(((((.....(((((((((((((((((.......)))))))...-..)))))))))).....)))))...))))))))). ( -23.70) >DroEre_CAF1 4141 102 - 1 UUUGAAGGCUAAAUGCAAGAU-UGAUCGAAAUUUAAACACUUUUAACAUGGCUUGGCUAUGUUAUAUUUUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA ....(((((...((((.....-.(((((.....(((((((((((((((((((...)))))))))......)))))))))).....)))))...))))))))). ( -26.80) >DroYak_CAF1 7171 101 - 1 UUUGAAGGCUAAAUGCAAGAU-UGAUCGGAAUUUAAACACUUUUAACAUGUUUGGCUUAUGUUUUAU-UUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA ....(((((...((((.....-.(((((.....((((((((((.((((((.......))))))....-..)))))))))).....)))))...))))))))). ( -22.70) >consensus UUUGAAGGCUAAAUGCAAGAU_UGAUCGGAAUUUAAACACUUUUAACAUGUUUGGCUUAUGUUAUAU_UUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA ....(((((...((((.......(((((.....(((((((((((((((((.......)))))))......)))))))))).....)))))...))))))))). (-20.96 = -21.36 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:30 2006