Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,826,685 – 9,826,778 |
Length | 93 |
Max. P | 0.660683 |
Location | 9,826,685 – 9,826,778 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 87.63 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -15.96 |
Energy contribution | -19.78 |
Covariance contribution | 3.81 |
Combinations/Pair | 1.05 |
Mean z-score | -2.65 |
Structure conservation index | 0.62 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9826685 93 + 22224390 AUUACGUGAAGGGGCUGCCCCGUGAACGUAAUGGCAAACAUGGGUUAAAGUUAAAGCCAAAGCCAAAGCUAAAGCCAGGUAGUCCAAGUCCAA .....(.((..((((((((.((....))...((((.......((((........))))..(((....)))...))))))))))))...))).. ( -27.90) >DroSec_CAF1 3107 93 + 1 AUUACGUGAAGGGGCUGCCCCGUGAACGUAAUGGCAAACAUGGGUUAAAGUUAAAGCCAAAGCUGAAGCUAAAGCCAGGUAGUCCAAGUCCAA .....(.((..((((((((.((....))...((((.......((((........))))..(((....)))...))))))))))))...))).. ( -28.60) >DroSim_CAF1 4366 93 + 1 AUUACGUGAAGGGGCUGCCCCGUGAACGUAAUGGCAAACAUGGGUUAAAGUUAAAGCCAAAGCUGAAGCUAAAGCCAGGUAGUCCAAGUCCAA .....(.((..((((((((.((....))...((((.......((((........))))..(((....)))...))))))))))))...))).. ( -28.60) >DroYak_CAF1 6109 77 + 1 AGUA----------------CGUGAACGUAAUGGCAAACAUGGGUUAAAGUUAAGCCAAAAGCAAAAGCUAAAGCCAGGUAGUCCAAGUCCAA ..((----------------((....)))).((((.....(((.(((....))).)))..(((....)))...))))((....))........ ( -17.80) >consensus AUUACGUGAAGGGGCUGCCCCGUGAACGUAAUGGCAAACAUGGGUUAAAGUUAAAGCCAAAGCUAAAGCUAAAGCCAGGUAGUCCAAGUCCAA ...........((((((((.((....))...((((.......((((........))))..(((....)))...))))))))))))........ (-15.96 = -19.78 + 3.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:28 2006