Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,790,316 – 9,790,422 |
Length | 106 |
Max. P | 0.831575 |
Location | 9,790,316 – 9,790,422 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 96.20 |
Mean single sequence MFE | -40.10 |
Consensus MFE | -37.33 |
Energy contribution | -37.11 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.06 |
Structure conservation index | 0.93 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9790316 106 + 22224390 GGUGUUGCUGCUUGCUGUGUUGCCCCAAAGCUGUUUGUUGCUAGCGAGCUGGCUAGAUGGCAGCAUUAUGCAGGCUCGCCCGAGCACAAGACACCAAAAACCAACA ((((((.((((.....((((((((....((((((((((.....)))))).))))....))))))))...))))((((....))))....))))))........... ( -42.10) >DroSec_CAF1 5061 104 + 1 GGUGUUGCUGCUUGCUG--UUGGCCCGGAGCUGUUUGUUGGUAGCGAGCUGGCUAGAUGGCAGCAUUAUGCAGGCUCGCCCGAGCACAAGACACCAAAAACCAACA ((((((.((((.(((((--((((((.((.((((........))))...)))))))....))))))....))))((((....))))....))))))........... ( -39.10) >DroSim_CAF1 6206 104 + 1 GGUGUUGCUGCUUGCUG--UUGGCCCGGAGCUGUUUGUUGGUAGCGAGCUGGCUAGAUGGCAGCAUUAUGCAGGCUCGCCCGAGCACAAGACACCAAAAACCAACA ((((((.((((.(((((--((((((.((.((((........))))...)))))))....))))))....))))((((....))))....))))))........... ( -39.10) >consensus GGUGUUGCUGCUUGCUG__UUGGCCCGGAGCUGUUUGUUGGUAGCGAGCUGGCUAGAUGGCAGCAUUAUGCAGGCUCGCCCGAGCACAAGACACCAAAAACCAACA ((((((.((((.(((((.......(((.((((((((((.....)))))).))))...))))))))....))))((((....))))....))))))........... (-37.33 = -37.11 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:36 2006