Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,784,776 – 9,784,882 |
Length | 106 |
Max. P | 0.986001 |
Location | 9,784,776 – 9,784,882 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 77.98 |
Mean single sequence MFE | -33.52 |
Consensus MFE | -20.83 |
Energy contribution | -21.17 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.16 |
Mean z-score | -2.55 |
Structure conservation index | 0.62 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9784776 106 + 22224390 AGUCGGUGGCCAAAGAGCGGCUGGCCAA-AAAAUAGAAGAAGCUCGUCGAAGAUUCCAGGCGAAAAAGCCAGGAGUA---GCAGCACUUGGCUAUGCAAAAAC-----ACCAGAG ....((((((......)).(((((((((-......((......))((.(...(((((.(((......))).))))).---.).))..))))))).)).....)-----))).... ( -31.60) >DroEre_CAF1 79229 96 + 1 AGUCGCUGGCCAA----------------AAAAUAGAAGAAGCCCGUCGAAGAUUCCUGGCUAAAAAGCCAGGAGCG---GCUGCACUUGGCCAUGCAAAACCAGGCGACCAGAG .((((((((((((----------------...........(((((......).(((((((((....))))))))).)---)))....)))))).((......))))))))..... ( -33.86) >DroYak_CAF1 71908 110 + 1 AGUCGGUGGCCAAAGAGCGGCUGGCCAAAAAAGUAGAAGAAGCCCGUCGAAGAUGCCUGGUGAAAAAGCCAGGAGCGCCAGCUUCACUUGGCUAUGCAAAAAC-----ACCAGAG ....((((((......)).((((((((....(((.((((..((.((((...))))((((((......))))))...))...))))))))))))).)).....)-----))).... ( -35.10) >consensus AGUCGGUGGCCAAAGAGCGGCUGGCCAA_AAAAUAGAAGAAGCCCGUCGAAGAUUCCUGGCGAAAAAGCCAGGAGCG___GCUGCACUUGGCUAUGCAAAAAC_____ACCAGAG .((..((((((((.........................................(((((((......)))))))((....)).....)))))))))).................. (-20.83 = -21.17 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:33 2006