Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,113,581 – 1,113,695 |
Length | 114 |
Max. P | 0.588492 |
Location | 1,113,581 – 1,113,695 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 84.42 |
Mean single sequence MFE | -34.40 |
Consensus MFE | -22.32 |
Energy contribution | -23.80 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.87 |
Structure conservation index | 0.65 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1113581 114 - 22224390 CAGAUUGCGAACGUCCUUGCAGGCACACCACGCAACUGGCGUAUCUCCGCUGCACUCCAAUGUAUUCGCUUAUCUGGAGGGCAGUGACUAAUGACGCCUCGCUCCUCAGAUACU ..((..((((......((((.((....))..))))..(((((.....((((((.((((((((........))).))))).)))))).......)))))))))...))....... ( -34.00) >DroSec_CAF1 10228 114 - 1 CAGAUUGCGAACGUCCUUGCAGGUACACCACGCAACUGGCGUAUCUCCGCUGCACUCCAAUGUUUUCGCUUAUCUGGAGGGCAGUGACUAAUGACGCCUCGCUCCUCAGAUACU ..((..((((.((((.(((.((((((.(((......))).)))))).((((((.((((((((........))).))))).))))))..))).))))..))))...))....... ( -37.10) >DroSim_CAF1 10827 114 - 1 CAGAUUGCGAACGUCCUUGCAGGUACACCACGCAACUGGCGUAUCUCCGCUGCACUCCAAUGUUUUCGCUUAUCUGGAGGGCAGUGACUAAUGACGCCUCGCUCCUCAGAUACU ..((..((((.((((.(((.((((((.(((......))).)))))).((((((.((((((((........))).))))).))))))..))).))))..))))...))....... ( -37.10) >DroEre_CAF1 11462 109 - 1 CAGAUUGCGAACGUCCUUGCACA----CCUCGCAAGUGGCGUAUCUCCGCUGCACUCCACUGGCUUCGCUUAUCUG-AGGGCAGUGACUAAUGACGCCUCGCUCCUCAGAUACU ......((((((((((((((...----....))))).)))))......((((........)))).)))).((((((-(((((.(((.(....).)))...)).))))))))).. ( -36.00) >DroYak_CAF1 10431 90 - 1 CAGAUUGCGAACGUCCUUGCACG----CA---------------CACCACUGCACUGCAAUGCCUUCGCUUAUCUGGAGGGCAGUGACUAACGAU-----ACUCCUCGGAUACU (((((.(((((.((..(((((.(----((---------------......)))..))))).)).)))))..)))))((((..((((.(....).)-----)))))))....... ( -27.80) >consensus CAGAUUGCGAACGUCCUUGCAGG_ACACCACGCAACUGGCGUAUCUCCGCUGCACUCCAAUGUCUUCGCUUAUCUGGAGGGCAGUGACUAAUGACGCCUCGCUCCUCAGAUACU ..((..((((.((((.(((..........((((.....)))).....((((((.((((((((........))).))))).))))))..))).))))..))))...))....... (-22.32 = -23.80 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:37 2006