Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,703,840 – 9,703,946 |
Length | 106 |
Max. P | 0.999796 |
Location | 9,703,840 – 9,703,946 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.63 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -21.03 |
Energy contribution | -20.79 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.11 |
Mean z-score | -2.20 |
Structure conservation index | 0.88 |
SVM decision value | 2.56 |
SVM RNA-class probability | 0.995307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9703840 106 + 22224390 ACAAAUACAAUUUCCUCACGGAAACGACCACCUUGCACCCCGUCGCUAUAUGUAC--------------AUAUAUAUGGAAUCCAGAUUCCGCCACGAUUUAUGCACAUGUUCGGUGCUC ..................((....))........(((((.(((.((.((((((..--------------..))))))(((((....))))))).)))......((....))..))))).. ( -22.40) >DroSec_CAF1 45329 106 + 1 ACAAAUACAAUUUCCUUACGGAAACGACCACCUUGCACCCCGUCGCUAUAUGUAC--------------AUAUAUAUGGAAUCCAGAUUCCGCCACGAUUUAUGCACAUGCUCGGUGCUC ..................((....))........(((((.(((.((.((((((..--------------..))))))(((((....))))))).)))......((....))..))))).. ( -24.70) >DroSim_CAF1 19739 106 + 1 ACAAAUACAAUUUCCUUACGGAAACGACCACCUUGCACCCCGUCGCUAUAUGUAC--------------AUAUAUAUGGAAUCCAGAUUCCGCCACGAUUUAUGCACAUGCUCGGUGCUC ..................((....))........(((((.(((.((.((((((..--------------..))))))(((((....))))))).)))......((....))..))))).. ( -24.70) >DroEre_CAF1 22663 110 + 1 ACAAAUACAAUUUCCUCUCGGAACCGACCACCUUGCACCACGCCGCUAUAUAUACA----------UACAUAUAUGUGGCAUCCAGAUUCCGCCACGAUUUAUGCACAUGUUGGGUGCUC ...........((((....))))..((.(((((.(((....(((((.((((((...----------...)))))))))))...........((..........))...))).))))).)) ( -23.90) >DroYak_CAF1 21803 120 + 1 ACAAAUACAAUUUCCUCACGGAACCGACCACCUUGCACCCCGUCGCCAUAUAUACACAUUCAUAUAUAUAUAUAUAUGGAAUCCAGAUUCCGCCACGAUUUAUGCACAUGUUCGGUGCUC ............(((....)))(((((.((...((((...(((.((.(((((((........)))))))........(((((....))))))).))).....))))..)).))))).... ( -24.30) >consensus ACAAAUACAAUUUCCUCACGGAAACGACCACCUUGCACCCCGUCGCUAUAUGUAC______________AUAUAUAUGGAAUCCAGAUUCCGCCACGAUUUAUGCACAUGUUCGGUGCUC ...........((((....))))...........(((((.(((.((.(((((((................)))))))(((((....))))))).)))......((....))..))))).. (-21.03 = -20.79 + -0.24)
Location | 9,703,840 – 9,703,946 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.63 |
Mean single sequence MFE | -38.66 |
Consensus MFE | -32.99 |
Energy contribution | -34.84 |
Covariance contribution | 1.85 |
Combinations/Pair | 1.05 |
Mean z-score | -3.56 |
Structure conservation index | 0.85 |
SVM decision value | 4.10 |
SVM RNA-class probability | 0.999796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9703840 106 - 22224390 GAGCACCGAACAUGUGCAUAAAUCGUGGCGGAAUCUGGAUUCCAUAUAUAU--------------GUACAUAUAGCGACGGGGUGCAAGGUGGUCGUUUCCGUGAGGAAAUUGUAUUUGU ((.((((.......(((((...((((.(((((((....)))))...(((((--------------....))))))).)))).))))).)))).))((((((....))))))......... ( -38.50) >DroSec_CAF1 45329 106 - 1 GAGCACCGAGCAUGUGCAUAAAUCGUGGCGGAAUCUGGAUUCCAUAUAUAU--------------GUACAUAUAGCGACGGGGUGCAAGGUGGUCGUUUCCGUAAGGAAAUUGUAUUUGU ((.((((.......(((((...((((.(((((((....)))))...(((((--------------....))))))).)))).))))).)))).))((((((....))))))......... ( -37.50) >DroSim_CAF1 19739 106 - 1 GAGCACCGAGCAUGUGCAUAAAUCGUGGCGGAAUCUGGAUUCCAUAUAUAU--------------GUACAUAUAGCGACGGGGUGCAAGGUGGUCGUUUCCGUAAGGAAAUUGUAUUUGU ((.((((.......(((((...((((.(((((((....)))))...(((((--------------....))))))).)))).))))).)))).))((((((....))))))......... ( -37.50) >DroEre_CAF1 22663 110 - 1 GAGCACCCAACAUGUGCAUAAAUCGUGGCGGAAUCUGGAUGCCACAUAUAUGUA----------UGUAUAUAUAGCGGCGUGGUGCAAGGUGGUCGGUUCCGAGAGGAAAUUGUAUUUGU ((.((((((.(((((((.......((((((.........)))))).(((((((.----------...))))))))).))))).))...)))).))..((((....))))........... ( -33.50) >DroYak_CAF1 21803 120 - 1 GAGCACCGAACAUGUGCAUAAAUCGUGGCGGAAUCUGGAUUCCAUAUAUAUAUAUAUAUGAAUGUGUAUAUAUGGCGACGGGGUGCAAGGUGGUCGGUUCCGUGAGGAAAUUGUAUUUGU ..(((((((.(((.(((((...((((.(((((((....))))).(((((((((((((....))))))))))))))).)))).)))))..))).))))((((....))))..)))...... ( -46.30) >consensus GAGCACCGAACAUGUGCAUAAAUCGUGGCGGAAUCUGGAUUCCAUAUAUAU______________GUACAUAUAGCGACGGGGUGCAAGGUGGUCGUUUCCGUGAGGAAAUUGUAUUUGU ((.((((.......(((((...((((.(((((((....)))))((((.(((((((......))))))).)))).)).)))).))))).)))).))((((((....))))))......... (-32.99 = -34.84 + 1.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:10 2006