Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,668,679 – 9,668,795 |
Length | 116 |
Max. P | 0.602647 |
Location | 9,668,679 – 9,668,795 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 83.76 |
Mean single sequence MFE | -22.83 |
Consensus MFE | -16.35 |
Energy contribution | -17.48 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.27 |
Mean z-score | -1.58 |
Structure conservation index | 0.72 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9668679 116 + 22224390 UAUUUCGUGAUAUAUAUACAAUAUUUUUAUCGCACAAAAUGCAAUGUUUGAAAGCUAAAAGCAAAUUCACGAGCUCUUUUCGAAUCCUUCGAGAUUUCUUUGCCUCUAUGAACACU ...(((((((.....................(((.....)))..(((((.........)))))...)))))))....((((((.....))))))...................... ( -15.80) >DroSec_CAF1 4279 114 + 1 --UUUCGUGAUAAAUAUACAAUAUUUUUAUCGCACAAAAUGCAUUGUUUGAAAGCUAGAGGCAAAUUCAUGAGCUCUUUUUGAAUCCUUCGGGAUUUCUUUGCCUCUAUAAACACU --....((((((((.(((...))).))))))))...........((((((.....((((((((((.....(....).....((((((....)))))).)))))))))))))))).. ( -29.30) >DroSim_CAF1 17859 116 + 1 UAUUUCGUGAUAAAUAUACAAUAUUUUUAUCGCACAAAAUGCAAUGUUUGAAAGCUAGAGGCAAAUUCAUGAGCUCUUUUUGAAUCCUUCCGGAUUUCUUUGCCUCUAUGAACACU ......((((((((.(((...))).))))))))...........((((((.....((((((((((.....(....).....((((((....)))))).)))))))))))))))).. ( -25.10) >DroEre_CAF1 11156 111 + 1 UA-----UUAUAUAUGCGCCAUAUUUGUAUUACCCAAAAUGCAAUGUUCGAAAUCUAAGAGCGAAUUCACGAGGUCAUUUCUAAUCCUGCGGGUUUUCUUUGCCUUUGUGAACACU ..-----.................(((((((......)))))))(((((.........)))))..(((((((((.((.....(((((...))))).....)).))))))))).... ( -21.10) >consensus UAUUUCGUGAUAAAUAUACAAUAUUUUUAUCGCACAAAAUGCAAUGUUUGAAAGCUAAAAGCAAAUUCACGAGCUCUUUUCGAAUCCUUCGGGAUUUCUUUGCCUCUAUGAACACU ......((((((((...........))))))))...........((((((.....((((((((((.....(((.....)))((((((....)))))).)))))))))))))))).. (-16.35 = -17.48 + 1.12)
Location | 9,668,679 – 9,668,795 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 83.76 |
Mean single sequence MFE | -24.08 |
Consensus MFE | -18.56 |
Energy contribution | -19.25 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.25 |
Mean z-score | -1.46 |
Structure conservation index | 0.77 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9668679 116 - 22224390 AGUGUUCAUAGAGGCAAAGAAAUCUCGAAGGAUUCGAAAAGAGCUCGUGAAUUUGCUUUUAGCUUUCAAACAUUGCAUUUUGUGCGAUAAAAAUAUUGUAUAUAUAUCACGAAAUA .(((....((((((((((....((.(((..(.(((.....))))))).)).))))))))))((...........))....(((((((((....))))))))).....)))...... ( -21.30) >DroSec_CAF1 4279 114 - 1 AGUGUUUAUAGAGGCAAAGAAAUCCCGAAGGAUUCAAAAAGAGCUCAUGAAUUUGCCUCUAGCUUUCAAACAAUGCAUUUUGUGCGAUAAAAAUAUUGUAUAUUUAUCACGAAA-- .(((....(((((((((((((.(((....)))))).....(....).....))))))))))((...........))....(((((((((....))))))))).....)))....-- ( -25.70) >DroSim_CAF1 17859 116 - 1 AGUGUUCAUAGAGGCAAAGAAAUCCGGAAGGAUUCAAAAAGAGCUCAUGAAUUUGCCUCUAGCUUUCAAACAUUGCAUUUUGUGCGAUAAAAAUAUUGUAUAUUUAUCACGAAAUA .(((....(((((((((((((.(((....)))))).....(....).....))))))))))((...........))....(((((((((....))))))))).....)))...... ( -29.90) >DroEre_CAF1 11156 111 - 1 AGUGUUCACAAAGGCAAAGAAAACCCGCAGGAUUAGAAAUGACCUCGUGAAUUCGCUCUUAGAUUUCGAACAUUGCAUUUUGGGUAAUACAAAUAUGGCGCAUAUAUAA-----UA .((((((.(((((((((........((.(((.(((....))))))))((((.((.......)).))))....)))).))))).).)))))..(((((...)))))....-----.. ( -19.40) >consensus AGUGUUCAUAGAGGCAAAGAAAUCCCGAAGGAUUCAAAAAGAGCUCAUGAAUUUGCCUCUAGCUUUCAAACAUUGCAUUUUGUGCGAUAAAAAUAUUGUAUAUAUAUCACGAAAUA (((((((.((((((((((..(((((....)))))......(....).....))))))))))......)))))))......(((((((((....))))))))).............. (-18.56 = -19.25 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:43 2006