Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,623,841 – 9,623,944 |
Length | 103 |
Max. P | 0.889912 |
Location | 9,623,841 – 9,623,944 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.64 |
Mean single sequence MFE | -48.43 |
Consensus MFE | -24.02 |
Energy contribution | -27.36 |
Covariance contribution | 3.34 |
Combinations/Pair | 1.08 |
Mean z-score | -2.06 |
Structure conservation index | 0.50 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9623841 103 - 22224390 GUCAGCUGUUGACGCG--CAGGGUUGCAUGCCGACUAGCGCCCCCGG---------------GCGGUUGAAAUGGGCGUCGUAGCUUAGCACCGCAGGCGGUAGGGGGCGCCAGCGGGCA (((((...)))))(((--(......))...(((.((.((((((((..---------------(((((.(...(((((......))))).))))))........)))))))).))))))). ( -46.20) >DroPse_CAF1 27326 114 - 1 AACAGCUGUCGACCCGGACAGGGUUGAUUGCGUGCGAGCGCAGCCUGCGGCUUUUUUUCGAAGCGUUCCAAACG------CUAGUUCACAGCUGCAGGCAAUAGAGGGCGGCAGCAGCAU ....(((((((.(((.............(((((....)))))((((((((((......(..(((((.....)))------)).).....))))))))))......))))))))))..... ( -50.60) >DroPer_CAF1 26471 114 - 1 AACAGCUGUCGACUCGGACAGGGUUGAUUGCGUGCGAGCGCAGCCUGCGGCUUUUUUUCGAAGCGUUCCAAACG------CUAGUUCACAGCUGCAGGCAAUAGAGGGCGGCAGCAGCAA ....(((((((.(((.............(((((....)))))((((((((((......(..(((((.....)))------)).).....))))))))))....)))..)))))))..... ( -48.50) >consensus AACAGCUGUCGACCCGGACAGGGUUGAUUGCGUGCGAGCGCAGCCUGCGGCUUUUUUUCGAAGCGUUCCAAACG______CUAGUUCACAGCUGCAGGCAAUAGAGGGCGGCAGCAGCAA ....(((((((.(((..............((((....)))).((((((((((.....................................))))))))))......))))))))))..... (-24.02 = -27.36 + 3.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:16 2006