Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,583,956 – 9,584,046 |
Length | 90 |
Max. P | 0.992322 |
Location | 9,583,956 – 9,584,046 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 85.24 |
Mean single sequence MFE | -33.46 |
Consensus MFE | -26.06 |
Energy contribution | -26.50 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.87 |
Structure conservation index | 0.78 |
SVM decision value | 2.32 |
SVM RNA-class probability | 0.992322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9583956 90 + 22224390 U-----------UCGAGGCACAUAUUUUUGUCUGAGUGUAGCGCAGCAACAUUAUGCUUAAGCGCUGCAAGCGCUUCGUGCUUAAAAGCGCGCGACACACA .-----------((.(((((........)))))))((((..(((((((......))))...(((((..((((((...))))))...))))))))..)))). ( -32.50) >DroSec_CAF1 42813 88 + 1 U-----------UUGUGGCACG--UUUUUUUCUGAGUGUAGCGCAGCAACAUUAUGCUUAAGCGCUGCAAGCGGUUCGUGCUUAAAAGCGCGCGACACACA .-----------.(((.((...--.......(((..((((((((((((......))))...))))))))..)))...(((((....))))))).))).... ( -32.80) >DroSim_CAF1 29317 88 + 1 U-----------UUGUGGCACG--UUUUUGUCUGAGUGUAGCGCAGCAACAUUAUGCUUAAGCGCUGCAAGCGGUUCGUGCUUAAAAGCGCGCGACACACA .-----------.(((.((.((--((((((.(((..((((((((((((......))))...))))))))..)))........)))))))).)).))).... ( -33.50) >DroEre_CAF1 47646 99 + 1 UCAAAUGCCACAUUGAGGCACGG-CUUUUUUCCGAGUGUAGAGCAGCAACAUUAUGCUUAAGCGCUGCAAGCGGUUCGUGCUUAAAAGCGCGCGACACAC- .....((((.......))))(((-.......))).((((...((((((......))))...(((((..(((((.....)))))...))))))).))))..- ( -30.10) >DroYak_CAF1 45081 99 + 1 UCAAAUGCCUCAUUUGAGGGCGU-UUUUUUUCUGAGUGUCGCGCAGCAACAUUAUGCUUAAGCGCUGCAAGCGGUUCGUGCUUAAAAGCGCGCGACACAC- ..(((((((((....)).)))))-)).........(((((((((.(((......)))((((((((.((.....))..))))))))....)))))))))..- ( -38.40) >consensus U___________UUGAGGCACG__UUUUUUUCUGAGUGUAGCGCAGCAACAUUAUGCUUAAGCGCUGCAAGCGGUUCGUGCUUAAAAGCGCGCGACACACA ...............................(((..((((((((((((......))))...))))))))..))).((((((........))))))...... (-26.06 = -26.50 + 0.44)
Location | 9,583,956 – 9,584,046 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 85.24 |
Mean single sequence MFE | -29.56 |
Consensus MFE | -25.20 |
Energy contribution | -25.60 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.85 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9583956 90 - 22224390 UGUGUGUCGCGCGCUUUUAAGCACGAAGCGCUUGCAGCGCUUAAGCAUAAUGUUGCUGCGCUACACUCAGACAAAAAUAUGUGCCUCGA-----------A ((.((((.(((((((....)))...((((((.....)))))).((((......)))))))).)))).))....................-----------. ( -28.90) >DroSec_CAF1 42813 88 - 1 UGUGUGUCGCGCGCUUUUAAGCACGAACCGCUUGCAGCGCUUAAGCAUAAUGUUGCUGCGCUACACUCAGAAAAAAA--CGUGCCACAA-----------A .(((((.((((((((..(((((.......))))).)))))...((((......))))))).)))))...........--..........-----------. ( -26.40) >DroSim_CAF1 29317 88 - 1 UGUGUGUCGCGCGCUUUUAAGCACGAACCGCUUGCAGCGCUUAAGCAUAAUGUUGCUGCGCUACACUCAGACAAAAA--CGUGCCACAA-----------A .(((((.((((((((..(((((.......))))).)))))...((((......))))))).)))))...........--..........-----------. ( -26.40) >DroEre_CAF1 47646 99 - 1 -GUGUGUCGCGCGCUUUUAAGCACGAACCGCUUGCAGCGCUUAAGCAUAAUGUUGCUGCUCUACACUCGGAAAAAAG-CCGUGCCUCAAUGUGGCAUUUGA -(((((..(((((((..(((((.......))))).)))))...((((......))))))..))))).(((.......-)))((((.......))))..... ( -30.30) >DroYak_CAF1 45081 99 - 1 -GUGUGUCGCGCGCUUUUAAGCACGAACCGCUUGCAGCGCUUAAGCAUAAUGUUGCUGCGCGACACUCAGAAAAAAA-ACGCCCUCAAAUGAGGCAUUUGA -(.((((((((((((..(((((.......))))).))).....((((......))))))))))))).).........-..(((.((....)))))...... ( -35.80) >consensus UGUGUGUCGCGCGCUUUUAAGCACGAACCGCUUGCAGCGCUUAAGCAUAAUGUUGCUGCGCUACACUCAGAAAAAAA__CGUGCCACAA___________A .(((((.((((((((..(((((.......))))).)))))...((((......))))))).)))))................................... (-25.20 = -25.60 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:37 2006