Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,558,005 – 9,558,097 |
Length | 92 |
Max. P | 0.520945 |
Location | 9,558,005 – 9,558,097 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 78.44 |
Mean single sequence MFE | -22.94 |
Consensus MFE | -13.99 |
Energy contribution | -14.22 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.12 |
Mean z-score | -1.40 |
Structure conservation index | 0.61 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.520945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9558005 92 + 22224390 CCGCUUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCCGGUGGUUGGGAAACAGAAACACCGC--AUUAG ..(((((((........)))))..((((((((((..((..(.....)..)))))))))))).((((....(....).....))))))--..... ( -25.10) >DroPse_CAF1 29744 86 + 1 CCGCUUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCAGGGGCG-GGAGCACAGGGACAACA-------G ...((((..(((.(((((((....((((((((((..((..(.....)..))))))))))))...))))-)))))))))).......-------. ( -23.00) >DroSec_CAF1 18244 92 + 1 CCGCUUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCCGGGGGUUGGGAAACAGAAACACCAC--UAUAG (((.(((((........)))))..((((((((((..((..(.....)..)))))))))))))))(((((.(....)...))).))..--..... ( -23.80) >DroYak_CAF1 17920 92 + 1 CCGCUUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCCGGGGGUUGGGAAGCAGAAACACCGC--GAUAG .(((.((.((((.((..(......((((((((((..((..(.....)..)))))))))))).......)..)).))))...))..))--).... ( -23.72) >DroMoj_CAF1 29143 81 + 1 --GUUGUUCGGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGAAAAUUGUCAACGGAGU--AGGGCCGC------ACCAGCU---AG --((((..((((((((((((......((((((.....))))))(((((....))))).))))))))--...)))).------..)))).---.. ( -21.00) >DroAna_CAF1 22772 89 + 1 CCGCCUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCAGGGGCCUUAUA---CUAACCAUCGA--ACAGG ((.(((((..((((((..(((.....((((((.....)))))).)))..)))..)))..))))))).......---...........--..... ( -21.00) >consensus CCGCUUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCCGGGGGUUGGGAAACAGAAACACCAC____UAG ((((......))............((((((((((..((..(.....)..)))))))))))).)).............................. (-13.99 = -14.22 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:30 2006