Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,530,665 – 9,530,814 |
Length | 149 |
Max. P | 0.977727 |
Location | 9,530,665 – 9,530,781 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 93.39 |
Mean single sequence MFE | -24.97 |
Consensus MFE | -21.20 |
Energy contribution | -21.20 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.16 |
Mean z-score | -2.33 |
Structure conservation index | 0.85 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940217 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9530665 116 - 22224390 GUUGCGAAAAAGUUUGUGGGAUUUUUAUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCAAAAUUGCAAAGUAUAGUUAGAAAUUUAGUGCGUGGCA ((..((...((((((.((((((((.....)))))((((((..((((.....)))).((((.....))))...)))))).................))).))))))....))..)). ( -24.50) >DroSec_CAF1 14501 116 - 1 GUUGCGAAAAAGUUUGUGGGAUUUUUAUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCAAAAUUGCAAAGUAUAGUUAGAAAUUUAGUGCGUGGCA ((..((...((((((.((((((((.....)))))((((((..((((.....)))).((((.....))))...)))))).................))).))))))....))..)). ( -24.50) >DroSim_CAF1 14007 116 - 1 GUUGCGAAAAAGUUUGUGGGAUUUUUAUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCAAAAUUGCAAAGUAUAGUUAGAAAUUUAGUGCGUGGCA ((..((...((((((.((((((((.....)))))((((((..((((.....)))).((((.....))))...)))))).................))).))))))....))..)). ( -24.50) >DroEre_CAF1 14824 116 - 1 GUUGCGAAAAAGUUUGUGGGAUUUUUCUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCAAAAUUACAAAGAAUAUUUAGAAAUUUAGUGCGUGGCA ((..((...((((((.((((((((.....)))))((((((..((((.....)))).((((.....))))...)))))).................))).))))))....))..)). ( -24.50) >DroYak_CAF1 15093 116 - 1 GUUGCGAAAAAGUUUGUGGGAUUUUUCUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCAAAAUUGCAAAGAAUAUUUAGAAAUUUAGUGCGUGGCA ((..((...((((((.((((((((.....)))))((((((..((((.....)))).((((.....))))...)))))).................))).))))))....))..)). ( -24.50) >DroAna_CAF1 21056 116 - 1 GUUGCGAAAAAGUUUGUGGGAAUUUUAAAAAAUUCGCGGAAAAUGUGAAAAAUAUAUGGUAUUAAAUCAAAAUUCUAGAAAAUUCCCAAGAAUAUUCUAAAAUUGAGUGCGUGGCA ((..((.....((((.((((((((((......((((((.....)))))).......((((.....)))).........)))))))))).))))((((.......)))).))..)). ( -27.30) >consensus GUUGCGAAAAAGUUUGUGGGAUUUUUAUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCAAAAUUGCAAAGAAUAGUUAGAAAUUUAGUGCGUGGCA ((..((...((((((.((((((((.....)))))((((((..((((.....)))).((((.....))))...)))))).................))).))))))....))..)). (-21.20 = -21.20 + 0.00)
Location | 9,530,702 – 9,530,814 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 95.67 |
Mean single sequence MFE | -25.25 |
Consensus MFE | -22.45 |
Energy contribution | -22.12 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.14 |
Mean z-score | -2.00 |
Structure conservation index | 0.89 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9530702 112 - 22224390 AACACA-AGCGGACUGAAAUUUUUUUGUUUUAGUGUUGCGAAAAAGUUUGUGGGAUUUUUAUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCA ..((((-(((..((((((((......)))))))).((......))))))))).(((((.....)))))((((((..((((.....)))).((((.....))))...)))))). ( -26.50) >DroSec_CAF1 14538 112 - 1 AACACA-AGCGGACUGAAAUUUUUUUGUUUUAGUGUUGCGAAAAAGUUUGUGGGAUUUUUAUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCA ..((((-(((..((((((((......)))))))).((......))))))))).(((((.....)))))((((((..((((.....)))).((((.....))))...)))))). ( -26.50) >DroSim_CAF1 14044 112 - 1 AACACA-AGCGGACUGAAAUUUUUUUGUUUUAGUGUUGCGAAAAAGUUUGUGGGAUUUUUAUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCA ..((((-(((..((((((((......)))))))).((......))))))))).(((((.....)))))((((((..((((.....)))).((((.....))))...)))))). ( -26.50) >DroEre_CAF1 14861 112 - 1 AACACA-AGCGGACUGAAAUUUUUUUGUUUUAGUGUUGCGAAAAAGUUUGUGGGAUUUUUCUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCA ..((((-(((..((((((((......)))))))).((......))))))))).(((((.....)))))((((((..((((.....)))).((((.....))))...)))))). ( -26.50) >DroYak_CAF1 15130 112 - 1 AACACA-AGCGGACUGAAAUUUUUUUGUUUUAGUGUUGCGAAAAAGUUUGUGGGAUUUUUCUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCA ..((((-(((..((((((((......)))))))).((......))))))))).(((((.....)))))((((((..((((.....)))).((((.....))))...)))))). ( -26.50) >DroAna_CAF1 21093 113 - 1 AACACACAGCGGACUGAAGUUUUUUUGUUUUAGUGUUGCGAAAAAGUUUGUGGGAAUUUUAAAAAAUUCGCGGAAAAUGUGAAAAAUAUAUGGUAUUAAAUCAAAAUUCUAGA ..(((.(((....)))((..((((((((.........))))))))..)))))((((((((......((((((.....))))))........(((.....)))))))))))... ( -19.00) >consensus AACACA_AGCGGACUGAAAUUUUUUUGUUUUAGUGUUGCGAAAAAGUUUGUGGGAUUUUUAUAAAAUCGCCGGAAAAUGUGAAAAAUAUAUGGUAUAAAACCGAAAUUCGGCA ..((((..((((((((((((......)))))))).)))).........)))).(((((.....)))))((((((..((((.....)))).((((.....))))...)))))). (-22.45 = -22.12 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:22 2006