Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,517,265 – 9,517,364 |
Length | 99 |
Max. P | 0.856514 |
Location | 9,517,265 – 9,517,364 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 78.87 |
Mean single sequence MFE | -44.08 |
Consensus MFE | -24.21 |
Energy contribution | -25.10 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.36 |
Mean z-score | -2.21 |
Structure conservation index | 0.55 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9517265 99 - 22224390 AUACUGCCUCCAGGGGCGGGUGGCAUGUCGCCAUCUACCGUGGCAGUUCCAUCGCCUGUUUCAG---GAGGAGCGGGAGCCGGUGGAAUGGGUGGAAUGACA ...(..((((((.((..(((((((.....))))))).)).)))..(((((((((((((((((..---..))))))))...))))))))))))..)....... ( -46.40) >DroSec_CAF1 856 99 - 1 AUACUGCCUCCAGGGGCGGGUGGCAUGUCGCCAUCUACAGUGGCAGUUCCAUCGCCUGUUUCAG---GAGGAGCGGGAGUCGGUGGAAUGGGUGGAAUGACA ...((((((....))))))......(((((((((.....))))).(((((((((((((((((..---..))))))))...))))))))).........)))) ( -41.90) >DroSim_CAF1 865 99 - 1 AUACUACCUCCAGGGGCGGGUGGCAUGUCGCCAUCUACAGUGGCAGUUCCAUCGCCUGUUUCAG---GAGGAGCGGGAGUCGGUGGAAUGGGUGGAAUGACA ...(((((((((..(..(((((((.....))))))).)..)))..(((((((((((((((((..---..))))))))...)))))))))))))))....... ( -42.70) >DroWil_CAF1 928 87 - 1 AUUAUGCCACCAGGAGCUGGCGGAAUGUCGCCAUCAACGGUCCCAGUGCCCUCGCCUGUGUCGG---GCG------------GUGGCGGAGGCGGCAUGACA .(((((((.((.(((.(((((((....)))))).....).)))...((((.(((((((...)))---)))------------).))))..)).))))))).. ( -40.00) >DroYak_CAF1 877 99 - 1 AUACUGCCGCCAGGAGCGGGUGGCAUGUCGCCAUCUACCGUGGCAGUACCAUCGCCCGUUUCAG---GAGGAGCUGGCGCCGGUGGUAUGGGCGGAAUGACC ...(((((((((.(.(..((((((.....))))))..)).)))).(((((((((((.(((((..---..))))).))))...))))))).)))))....... ( -48.40) >DroAna_CAF1 970 102 - 1 AUAAUGCCACCGGGCGCUGGUGGCAUGUCGCCUUCAACGGUGACAGUUCCAUCUCCAGUCUCGGGCGGAGGAGCCGGAGCCAAUGCCAUGGCGGGCAUGACG ...(((((.((((((((((((((..(((((((......)))))))...)))...)))))(((.(((......))).))).....))).)))..))))).... ( -45.10) >consensus AUACUGCCUCCAGGGGCGGGUGGCAUGUCGCCAUCUACAGUGGCAGUUCCAUCGCCUGUUUCAG___GAGGAGCGGGAGCCGGUGGAAUGGGUGGAAUGACA ...((((((((((((((((((((..((((((........))))))......)))))))))))..........((....))...))))...)))))....... (-24.21 = -25.10 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:10 2006