Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,504,621 – 9,504,725 |
Length | 104 |
Max. P | 0.629859 |
Location | 9,504,621 – 9,504,725 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.84 |
Mean single sequence MFE | -26.52 |
Consensus MFE | -18.43 |
Energy contribution | -19.27 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.70 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629859 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9504621 104 - 22224390 -ACUAAAUGCUUGCAC-UCCCAAU-UUAGAUCCUCCGCUGGUGGCAUGACUUUGGCAUCACCCUCACCGCCUCGAUCUUCGCCACCUUGGCCUUCGAGGCACCCAUU -.((((((........-.....))-)))).........(((((.((......)).)))))........(((((((.....(((.....)))..)))))))....... ( -26.82) >DroPse_CAF1 14119 107 - 1 CAUUACCCUUUCGAAUCUCUCGCUUGCAGAUUCUUCGCUGGUGGCAUGACUUUGGCAUCACCCUGACGGCCUCCAUAUUCGCGACGCUGGCCUUUGAGGCCCCCAUC ............(((((((......).)))))).(((((((.(((.((.(...((......)).).))))).))).....))))....((((.....))))...... ( -25.00) >DroSec_CAF1 199 104 - 1 -UCGAAAUGCUUGAAC-UUCCAUU-UCAGAUCCUCCGCUGGUGGAACGACUUUGGCAUCACCCUCACCGCCUCGAUCUUCGCCACGUUGGCCUUCGAGGCACCCAUU -.....(((((.....-((((((.-.(((........))))))))).......)))))..........(((((((.....(((.....)))..)))))))....... ( -28.10) >DroEre_CAF1 214 105 - 1 -UCCAAAUUGUUGAAU-UCCCAUUCACAGAUCCUCCGCUGGUGGCACGACUUUGGCAUCACACUUACCGCCUCGAUCUUUGCCACUUUGGCCUUCGAGGCACCCAUU -.......(((..((.-((((((...(((........)))))))...)).))..)))...........(((((((.....(((.....)))..)))))))....... ( -26.40) >DroYak_CAF1 193 105 - 1 -UUUAAAGUCUUGAAU-UUUCGAUUUUAGAUCCUUCGCUGGUGGCACGACUUUGGCAUCACCCUUACCGCCUCGAUCUUCGCCACUUUGGCCUUCGAGGCACCCAUU -(((((((((......-....)))))))))........(((((.((......)).)))))........(((((((.....(((.....)))..)))))))....... ( -27.80) >DroPer_CAF1 14055 107 - 1 CUUUACCCUUUCGAAUCUCUCGCUUGCAGAUUCUUCGCUGGUGGCAUGACUUUGGCAUCACCCUGACGGCCUCCAUAUUCGCGACGCUGGCCUUUGAGGCCCCCAUC ............(((((((......).)))))).(((((((.(((.((.(...((......)).).))))).))).....))))....((((.....))))...... ( -25.00) >consensus _UCUAAAUUCUUGAAU_UCCCAAUUUCAGAUCCUCCGCUGGUGGCACGACUUUGGCAUCACCCUCACCGCCUCGAUCUUCGCCACGUUGGCCUUCGAGGCACCCAUU ......................................(((((.((......)).)))))........(((((((.....(((.....)))..)))))))....... (-18.43 = -19.27 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:07 2006