Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,480,181 – 9,480,287 |
Length | 106 |
Max. P | 0.505281 |
Location | 9,480,181 – 9,480,287 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 86.42 |
Mean single sequence MFE | -28.18 |
Consensus MFE | -24.30 |
Energy contribution | -24.58 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.21 |
Mean z-score | -1.39 |
Structure conservation index | 0.86 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9480181 106 + 22224390 AUGAAUCCUCGUUACGUGGCUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGCAACUUUGGCG ......((.((...)).))..((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).)))))))). ( -31.00) >DroSec_CAF1 23400 106 + 1 AUGAAUCCUCGUUACGUGGCUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGUAACUUUGGCG ......((.((...)).))..((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).)))))))). ( -29.00) >DroSim_CAF1 23531 101 + 1 -----UACUCGUUACGUGGCUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGUAACUUUGGCG -----................((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).)))))))). ( -28.20) >DroEre_CAF1 23520 98 + 1 AUGAAUCCUCGUUACGUGGCUGCAGAAGC--------AGCCGGGAAAAUUGUAUAUUGUUAUGUGACGUUCAUUCCGGGCUAAUGCUAAAAUUAGCUACUUUGGCG ..((((...((((((((((((((....))--------)))).....(((........)))))))))))...))))...(((((.((((....))))....))))). ( -28.80) >DroYak_CAF1 23414 106 + 1 AUGAAAACUCGUUACAUGUCCGCAGAAGUGUGUGGGAUGCCGGCAAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAAGCUAAAAUUAGCAGCAUUGGCG ..............(((.((((((......)))))))))((((..(((((.(((((....))))).)))))...))))(((((.(((.........))).))))). ( -23.90) >consensus AUGAAUCCUCGUUACGUGGCUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGCAACUUUGGCG .....................((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).)))))))). (-24.30 = -24.58 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:52 2006