Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,441,094 – 9,441,189 |
Length | 95 |
Max. P | 0.984475 |
Location | 9,441,094 – 9,441,189 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 76.64 |
Mean single sequence MFE | -20.20 |
Consensus MFE | -11.35 |
Energy contribution | -13.22 |
Covariance contribution | 1.87 |
Combinations/Pair | 1.00 |
Mean z-score | -2.57 |
Structure conservation index | 0.56 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9441094 95 + 22224390 GCUGGCACUUUGAACCGAAGUAGAGGGCGCACUUCUACACUUCUACACCCCCUAGAUUGGUUCAUUCAUUCAUUUGCCAACAAAACACUGUACAC- (.(((((...((((((((.(((((((.....)))))))...((((.......))))))))))))..........))))).)..............- ( -24.42) >DroSec_CAF1 22822 86 + 1 GCUGGCACUUUGAACCGAAGUAGAGGGCGCACUUCUACAC---------CCCUAGAUUGGUUCAUUCAUUCAUUCGCCAACAAAACACUGUGCAC- ((((((....((((((((..(((.(((.(........).)---------)))))..))))))))...........))))(((......)))))..- ( -21.76) >DroEre_CAF1 22971 73 + 1 GCUGGCACUUUGAACCGAA-----------------------CUACACCCCCUAGAUUGGUUCAUUCAUUCAUUUGCCAACAAAACGCAGUGCACU ....(((((.((((((((.-----------------------(((.......))).))))))))........((((....))))....)))))... ( -17.30) >DroYak_CAF1 23673 73 + 1 GCUGGCACUUUGAACCGAA-----------------------CUACACCCCCUAGAUUGGUUCAUUCAUUCAUUUGCCAACAAAACACAGUGCACU ....(((((.((((((((.-----------------------(((.......))).))))))))........((((....))))....)))))... ( -17.30) >consensus GCUGGCACUUUGAACCGAA_______________________CUACACCCCCUAGAUUGGUUCAUUCAUUCAUUUGCCAACAAAACACAGUGCAC_ (.(((((...((((((((.(((((((.....)))))))....(((.......))).))))))))..........))))).)............... (-11.35 = -13.22 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:32 2006