Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,438,078 – 9,438,181 |
Length | 103 |
Max. P | 0.623747 |
Location | 9,438,078 – 9,438,181 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 82.90 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -16.64 |
Energy contribution | -18.32 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.04 |
Mean z-score | -2.11 |
Structure conservation index | 0.58 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9438078 103 + 22224390 GAGCACAAUCGAUGCGAAAGUUUGGAGGGUGAAAAGGGGUGGUCAGUUUUCCCGGAAAACUAAAUUCCCCCUGGCCAAUUUAAAGCUGAUGUAUUGUUGUUUA ....((((.(((((((..(((((....(((....(((((..((.(((((((...)))))))..))..))))).)))......)))))..)))))))))))... ( -31.00) >DroSec_CAF1 19610 102 + 1 GAGCACAAUCGAUGAGAAAGUUUGGAGGGUGAAAAGGGGUGGUCAGUUUUCCCGGAAAACUAAUUUCCCACUGGCCAAUUUAAAGCUGAAGUAUUGUUGU-AA ....((((.(((((....(((((....(((....(((((..((.(((((((...))))))).))..))).)).)))......)))))....)))))))))-.. ( -25.20) >DroEre_CAF1 20025 101 + 1 GAGCACAG-CAAUGGGAAAGUUUGGAGGGUGAAAAGGGGUGGUCAGUUUUCCCGGAAAACUAAUUGCCCACUUGGCAAUUUAAAGCUAAAGUAUUGCUCU-AA (((((((.-...))....(((((.(((..((..((((((..((.(((((((...))))))).))..))).)))..)).))).))))).......))))).-.. ( -31.40) >DroYak_CAF1 20609 87 + 1 GCGCACUG-CAAUGGGAAAGUUAGCAGGGUGAAAAGGGGUGGUCAGUUUUCCCGGAAAACUAAUUACCCACUUGGCAAUUUAAAGCUA--------------- .(((.(((-((((......))).)))).)))..((((((((((.(((((((...))))))).))))))).)))(((........))).--------------- ( -26.90) >consensus GAGCACAA_CAAUGGGAAAGUUUGGAGGGUGAAAAGGGGUGGUCAGUUUUCCCGGAAAACUAAUUUCCCACUGGCCAAUUUAAAGCUAAAGUAUUGUUGU_AA ..................(((((.(((..((..((((((((((.(((((((...))))))).))))))).)))..)).))).)))))................ (-16.64 = -18.32 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:29 2006