Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,416,876 – 9,416,979 |
Length | 103 |
Max. P | 0.668111 |
Location | 9,416,876 – 9,416,979 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -26.70 |
Consensus MFE | -15.50 |
Energy contribution | -17.14 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.24 |
Structure conservation index | 0.58 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.668111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9416876 103 - 22224390 AGUGCUCUUUCGAAAUGUUUGUGGUUUCGAGAUGGCAGACAGGAGAUGU---UUGUCUGUAGUUUUUACAUUUUGAAAGAAA------CUAACCCUAAGCUAAACGAUCUAA (((..(((((((((((((..........(((((.(((((((((.....)---)))))))).))))).))))))))))))).)------))...................... ( -26.80) >DroSec_CAF1 2208 106 - 1 AGUGCUCUUUCGAAAUGAUUAUGGUUUCGAGAGGGCAAACAGGAGAACUCCCUCCUCUGUAGUUUUUACAUUUUGAAAGAAA------CUAACCCUAAGCUAAACGAUCUAA ..((((((((((((((.......))))))))))))))...(((((......)))))...((((((((..........)))))------)))..................... ( -28.10) >DroSim_CAF1 1914 106 - 1 AGUGCUCUUUCGAAAUGAUUAUGGUUUCGAGAGGGCAAACAGGAGGACUCCCUCCUCUGUAGUUUUUACAUUUUAAAAGAAA------CUAACCCUAAGCUAAACGAUCUAA ..((((((((((((((.......))))))))))))))...((((((....))))))...((((((((..........)))))------)))..................... ( -31.20) >DroEre_CAF1 2129 90 - 1 ACUGCUCUUUUGAAACG------------AGAGGGCAAACAGGAGAACU----GCUCUGUAGUUUUUACAUUUGGAAGGAAG------CUAACCCUAAGCUAAACGAUCUAA ..((((((((((...))------------)))))))).....(((((((----((...)))))))))....(((((.(..((------((.......))))...)..))))) ( -21.90) >DroYak_CAF1 2146 108 - 1 ACGGCUCUUUCGAAACGAUUGUGCUUUCGAGAGGGCAAACAGGAGAACU----CCUCUGUAGUUUUUACAUUUGGAAAGAAACUAAAACUAACCCUAAGCUAAACGAUCUAA .((((((((((((((((....)).))))))))))))..((((..(....----)..))))((((((....(((....)))....))))))..............))...... ( -25.50) >consensus AGUGCUCUUUCGAAAUGAUUAUGGUUUCGAGAGGGCAAACAGGAGAACU___UCCUCUGUAGUUUUUACAUUUUGAAAGAAA______CUAACCCUAAGCUAAACGAUCUAA ...(((((((((((((.......)))))))))))))((((.((((.........))))...))))............................................... (-15.50 = -17.14 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:06 2006