Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,383,057 – 9,383,177 |
Length | 120 |
Max. P | 0.625466 |
Location | 9,383,057 – 9,383,177 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.83 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -20.00 |
Energy contribution | -20.33 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.09 |
Structure conservation index | 0.77 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9383057 120 + 22224390 AUUAUUCAUGGAUUUUGGUUGGUAGAUUUUUCGGUGGUAGCGCCGGCAUUAUUGCAGUCAAUUGAAUUUGCAAAUUGCCAAUUAUAAUUACAGCAAACGGCAAACCAAAAUGAAAACAAC ...........(((((((((.((((.......((((....))))((((...(((((.((....))...)))))..))))........)))).((.....)).)))))))))......... ( -28.60) >DroSim_CAF1 331 105 + 1 AUUAUUGAUAG------------CGAUUUUUCGGUGGUAG--CCGGCAUUAUUGCAGUCAAUUGAAUUCGCAAAUUGCCAAUGAUAAUUACAGCAAACGGCA-ACCAAAAUGAAAACAAC ...........------------....((((((.((((.(--((((((...((((..((....))....))))..))))(((....))).........))).-))))...)))))).... ( -23.90) >DroYak_CAF1 497 105 + 1 AUUAUUCAUAG------------CGAUUUUUCGGUGGUAG--CCGGCAUUAUUGCAGUCAAUUGAAUUUGCAAAUUGCCAAUUAUAAUUACAGCAAACGGCA-ACCAAAAUGAAAACAAA ....(((((..------------(((....))).((((.(--((((((....))).((.(((((((((.((.....)).)))).)))))))......)))).-))))..)))))...... ( -25.20) >consensus AUUAUUCAUAG____________CGAUUUUUCGGUGGUAG__CCGGCAUUAUUGCAGUCAAUUGAAUUUGCAAAUUGCCAAUUAUAAUUACAGCAAACGGCA_ACCAAAAUGAAAACAAC ...........................((((((.((((......((((...(((((.((....))...)))))..)))).............((.....))..))))...)))))).... (-20.00 = -20.33 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:34 2006