Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,381,942 – 9,382,033 |
Length | 91 |
Max. P | 0.999621 |
Location | 9,381,942 – 9,382,033 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.85 |
Mean single sequence MFE | -23.18 |
Consensus MFE | -21.59 |
Energy contribution | -21.27 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -0.92 |
Structure conservation index | 0.93 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9381942 91 + 22224390 AAAAAAUAAUUCAAAAA-U-------------------------AAGCGCUAUUUUUGUGCCCGCCAUCGUACUGACAGGCCAAAGUUCAUGAGACAGGGCAAAGGGGUCAGCAGCC .................-.-------------------------..(((((((((((.((((((((.((.....))..)))....(((.....))).))))).)))))).))).)). ( -20.00) >DroSec_CAF1 12150 91 + 1 AAAAAAUAAGACAAAGA-U-------------------------AGGCGCUAUUUUUGUGCCCGCCAUCGUACUGACAGGCCAAAGUUCAUGAGACAGGGCAAAGGGGUCAGCAGCC .................-.-------------------------.((((((((((((.((((((((.((.....))..)))....(((.....))).))))).)))))).))).))) ( -22.50) >DroYak_CAF1 11774 117 + 1 AAAUAAUAAUUGAAAAAAUAUGAAACAUUAAUUGAAAUACCUAAGGGCGCUAUUCUUGUGCCCGUCAUCGUACCGACAGGCCAAAGUUCAUGAGACAGGGCAAAGGGGUCAGCAGCC ......(((((((..............)))))))...........((((((((((((.((((((((.((((...(((........))).))))))).))))).)))))).))).))) ( -27.04) >consensus AAAAAAUAAUUCAAAAA_U_________________________AGGCGCUAUUUUUGUGCCCGCCAUCGUACUGACAGGCCAAAGUUCAUGAGACAGGGCAAAGGGGUCAGCAGCC .............................................((((((((((((.((((((((.(((...)))..)))....(((.....))).))))).)))))).))).))) (-21.59 = -21.27 + -0.33)
Location | 9,381,942 – 9,382,033 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 77.85 |
Mean single sequence MFE | -22.83 |
Consensus MFE | -23.71 |
Energy contribution | -22.83 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.19 |
Mean z-score | -0.54 |
Structure conservation index | 1.04 |
SVM decision value | 3.80 |
SVM RNA-class probability | 0.999621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9381942 91 - 22224390 GGCUGCUGACCCCUUUGCCCUGUCUCAUGAACUUUGGCCUGUCAGUACGAUGGCGGGCACAAAAAUAGCGCUU-------------------------A-UUUUUGAAUUAUUUUUU (((.((((..............((....))..((((((((((((......)))))))).))))..))))))).-------------------------.-................. ( -21.30) >DroSec_CAF1 12150 91 - 1 GGCUGCUGACCCCUUUGCCCUGUCUCAUGAACUUUGGCCUGUCAGUACGAUGGCGGGCACAAAAAUAGCGCCU-------------------------A-UCUUUGUCUUAUUUUUU (((.((((..............((....))..((((((((((((......)))))))).))))..))))))).-------------------------.-................. ( -24.10) >DroYak_CAF1 11774 117 - 1 GGCUGCUGACCCCUUUGCCCUGUCUCAUGAACUUUGGCCUGUCGGUACGAUGACGGGCACAAGAAUAGCGCCCUUAGGUAUUUCAAUUAAUGUUUCAUAUUUUUUCAAUUAUUAUUU (((.((((..............((....))..((((((((((((......)))))))).))))..)))))))............................................. ( -23.10) >consensus GGCUGCUGACCCCUUUGCCCUGUCUCAUGAACUUUGGCCUGUCAGUACGAUGGCGGGCACAAAAAUAGCGCCU_________________________A_UUUUUGAAUUAUUUUUU (((.((((..............((....))..((((((((((((......)))))))).))))..)))))))............................................. (-23.71 = -22.83 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:33 2006