Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,325,551 – 9,325,653 |
Length | 102 |
Max. P | 0.957878 |
Location | 9,325,551 – 9,325,653 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 93.14 |
Mean single sequence MFE | -23.48 |
Consensus MFE | -21.78 |
Energy contribution | -22.18 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.93 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957878 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9325551 102 + 22224390 AAAAGGUGGAACAAAAAAAUGGAGGCAAUGGAAAA-CCCAAGCCAAAAUGGGGAGGAGCAGUUACAGUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC ..(((.(((((....(((.(((..(((.(((....-((((........))))..(((((.......)))))..)))..)))..))).)))...))))).))). ( -25.20) >DroSec_CAF1 106294 102 + 1 AAAAGGUGGAACAAAAAAAUAGAGGCAAUGGAAAA-CCCAAGCCAAAAUGGGGAGGAGCAGUUACAGUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC ..(((.(((((............(((..(((....-.))).)))....((((..(((((.......))))).((.....)).)))).......))))).))). ( -23.00) >DroSim_CAF1 105335 102 + 1 AAAAGGUGGAACAAAAAAAUAGAGGCAAUGGAAAA-CCCAAGCCAAAAUGGGGAGGAGCAGUUACAGUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC ..(((.(((((............(((..(((....-.))).)))....((((..(((((.......))))).((.....)).)))).......))))).))). ( -23.00) >DroEre_CAF1 115080 95 + 1 ---AGGUGGAAAU-----AUAGAGGCAAUGGAAAAUGCCAAGCCAAAAUGGGGAGGAGCAGUUACAUUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC ---((((.(((((-----.....(((..(((......))).)))......(((....((((((............)))))).))).......))))).)))). ( -22.80) >DroYak_CAF1 106580 99 + 1 AAAAGGUGGAAAAAA---AAAGAGGCAAUGGAAAA-GCCAAGCCAAAAUGGGGAGGAGCAGUUACAGUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC ...((((.((((...---.....(((..(((....-.))).)))....((((..(((((.......))))).((.....)).)))).......)))).)))). ( -23.40) >consensus AAAAGGUGGAACAAAAAAAUAGAGGCAAUGGAAAA_CCCAAGCCAAAAUGGGGAGGAGCAGUUACAGUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC ..(((.(((((............(((..(((......))).)))....((((..(((((.......))))).((.....)).)))).......))))).))). (-21.78 = -22.18 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:18 2006