Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,285,076 – 9,285,183 |
Length | 107 |
Max. P | 0.547871 |
Location | 9,285,076 – 9,285,183 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 87.71 |
Mean single sequence MFE | -29.12 |
Consensus MFE | -22.04 |
Energy contribution | -22.44 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -1.53 |
Structure conservation index | 0.76 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9285076 107 + 22224390 UCGCGCAGAAGUGCGAAAGGGAGAAUCGCUGGUAAUAGAAAGAGAG--GG-GAAAGGGUGCACUAAAUUGUGUUCGAUUGCACUGUCGAACAGGAUUUUCGUUCGAUUCG ((((((....))))))......(((((.(((....))).....(((--.(-((((((.....))...((.((((((((......)))))))).))))))).)))))))). ( -31.30) >DroSec_CAF1 67260 107 + 1 CCGCGCAGAAGUGCGAAAGGGAGAAUCGUUAGUAAUAGAAAGAGAG--GG-GUAUGGGUGCACUAAAUUGUGUUCGAUUACACUGUCGAACAGGAUUUUCGUUCGAUUCG .(((((....))))).......(((((.(((....)))........--..-....(..((....(((((.((((((((......)))))))).))))).))..)))))). ( -29.20) >DroSim_CAF1 64829 107 + 1 CCGCGCAGAAGUGCGAAAGGGAGAAUCGUUAGUAAUAGAAAGAGAG--GG-GUAUGGGUGCACUAAAUUGUGUUCGAUUACACUGUCGAACAGGAUUUUCGUUCGAUUUG .(((((....))))).......(((((.(((....)))........--..-....(..((....(((((.((((((((......)))))))).))))).))..)))))). ( -26.70) >DroEre_CAF1 73776 107 + 1 CCGCGCAGAAGUGCGAAAGAGAGAAUCGUUGGUAAUAGGAAACGAA--GU-GGAAGGGCGCACUAAAUUGUGUUCGAUUACACUGUCGAACAGGAUUUUCGGUCGAUUUA .(((((....))))).......((((((((((.....(....)..(--((-(........))))(((((.((((((((......)))))))).))))))))).)))))). ( -31.00) >DroYak_CAF1 66104 110 + 1 CCGCGCAGAAGUGCAAAAGGGAGAAUCGUUAGUAAAAGAAAAAAAAUAGUGGGAAUGGAGCACUAACUUGUGUUCGAUUACACUGGCGAGCAGGAUUUUCAGUCGAAUUG ..((((....))))......(((((((...................(((((..(((.((((((......)))))).))).)))))(....)..))))))).......... ( -27.40) >consensus CCGCGCAGAAGUGCGAAAGGGAGAAUCGUUAGUAAUAGAAAGAGAG__GG_GGAAGGGUGCACUAAAUUGUGUUCGAUUACACUGUCGAACAGGAUUUUCGUUCGAUUUG .(((((....))))).......((((((............................((....))(((((.((((((((......)))))))).))))).....)))))). (-22.04 = -22.44 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:01 2006