Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,274,078 – 9,274,170 |
Length | 92 |
Max. P | 0.645167 |
Location | 9,274,078 – 9,274,170 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 95.11 |
Mean single sequence MFE | -28.33 |
Consensus MFE | -23.05 |
Energy contribution | -23.55 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.81 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9274078 92 - 22224390 CAGCUUGGAAACCUGUGCAAACCUUGGCCAGGAAUCUACAAUCCUGGGAAAAUUACGUAGGAUCCGGGAUCCAUUUGUAGGCCGAGCAACCA ..((((((...((((.((........))))))..((((((((((((((..............)))))))).....))))))))))))..... ( -30.44) >DroSec_CAF1 56607 92 - 1 CAACUUGGAAUCCUGUGCAAACCUUGGCCAGGAAUCUACAAUCCUGGGAAAAUUACGUAGGAUCCGGGAUCCAUUUGUAGGCCGAGCAACCA ...(((((..(((((.((........))))))).((((((((((((((..............)))))))).....)))))))))))...... ( -27.44) >DroEre_CAF1 62830 92 - 1 CAACUUGGAAUCCUGUGCAAGCCCGGGCCAGGAAUCUACAAUCCUGUGAAAAUUACGUAGGAUCCGUGAUCCAUUUGUAGGCCGAGCAACCA ...(((((..(((((.((........))))))).(((((((....((((...))))...(((((...)))))..))))))))))))...... ( -26.40) >DroYak_CAF1 53851 92 - 1 CAACUUGGAAUCCUGUGCAAACCUUGGGCAGGAAUCUACAAUCCUGGGAAAAUUACAUAGGAUCCGGGAUCCAUUUGUAGGCCGAGCAACCA ...(((((..((((((.((.....)).)))))).((((((((((((((..............)))))))).....)))))))))))...... ( -29.04) >consensus CAACUUGGAAUCCUGUGCAAACCUUGGCCAGGAAUCUACAAUCCUGGGAAAAUUACGUAGGAUCCGGGAUCCAUUUGUAGGCCGAGCAACCA ...(((((..(((((.((........))))))).(((((((((....))..........(((((...)))))..))))))))))))...... (-23.05 = -23.55 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:54 2006