Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,252,765 – 9,252,864 |
Length | 99 |
Max. P | 0.538922 |
Location | 9,252,765 – 9,252,864 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 79.02 |
Mean single sequence MFE | -20.49 |
Consensus MFE | -14.09 |
Energy contribution | -14.62 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.05 |
Mean z-score | -1.13 |
Structure conservation index | 0.69 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538922 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9252765 99 + 22224390 A-------UAAAAA-AAAAAUGAACAAACGACGUGAGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUUACCACUUUAGCUUUUAUCAAACGGUAGG .-------......-.....((((((..((((((((...((((((((........))))))))))))))))...))))))............(((((....))))). ( -17.60) >DroPse_CAF1 38296 92 + 1 ----------AAAA-AGAAAUGAACAAACGACGUGUGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUAACCAUUCAAGCCCUCUCCAGGUGG---- ----------....-.(((...((((..(((((((...(((((((((........))))))))))))))))...)))).....)))..(((.......)))..---- ( -16.30) >DroSim_CAF1 34478 107 + 1 AUGCCUGGUAAAAAAAAAAAUGAACAAACGACGUGAGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUUACCACUUUAGCUUUUGUCAAACGGUAGG .((((((..((((.......((((((..((((((((...((((((((........))))))))))))))))...))))))..........))))..))...)))).. ( -20.83) >DroEre_CAF1 40524 102 + 1 AUGGCUGGCAAA-----AAAUGAACAAACGAUGUGAGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUUACCACUUUAGCGUCUAUCAAACGGUAGA ...(((((....-----...((((((..(((..(((...((((((((........)))))))))))..)))...)))))).....))))).((((((....)))))) ( -23.80) >DroYak_CAF1 32197 103 + 1 ACGGCUGGCAAA----AAAAUCAACAAACGACGUGAGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUUACCACUUCAGCUUUUAUCAAACGUUAGG ..((((((....----............((((((((...((((((((........))))))))))))))))..(((.....))).))))))................ ( -20.00) >DroAna_CAF1 42125 88 + 1 AAGGC----------AAAAAUGAACAAACGACGUGCGAAUAAAUUGACAAUUCCAUCAAUUUGUACUGUCGACGUGUUUACCAUUUUAGCCU---------GGUCGA .((((----------.((((((((((..((((((((((((..((.((....)).))..)))))))).))))...))))...)))))).))))---------...... ( -24.40) >consensus A_GGC____AAA___AAAAAUGAACAAACGACGUGAGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUUACCACUUUAGCUUUUAUCAAACGGUAGG ....................((((((..(((((((...(((((((((........))))))))))))))))...))))))........................... (-14.09 = -14.62 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:50 2006