Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,176,277 – 9,176,368 |
Length | 91 |
Max. P | 0.583077 |
Location | 9,176,277 – 9,176,368 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 97.79 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -19.10 |
Energy contribution | -19.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.33 |
Structure conservation index | 1.02 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9176277 91 + 22224390 AAGUGGUUGCCAGUGGAUCAGUGUGGUUCGGGUGAAGGUCGAAAGAAGAGCGAAGAGCGAGCGAAAGGAAGAAACGACGACGACAAAGUGG ..((.((((((...(((((.....))))).)))....((((........((.....))...(....).......))))))).))....... ( -19.70) >DroSec_CAF1 4166 89 + 1 AAGUGGUUGCCAGUGGAUCAGU--GGUUCGGGUGAAGGUCGAAAGAAGAGCGAAGAGCGAGCGGAAGGAAGAAACGACGACGACAAAGUGG ..((.((((....((..((...--.((((...((....((....))....))..))))...(....)...))..)).)))).))....... ( -18.20) >DroSim_CAF1 4175 89 + 1 AAGUGGUUGCCAGUGGAUCAGU--GGUUCGGGUGAAGGUCGAAAGAAGAGCGAAGAGCGAGCGGAAGGAAGAAACGACGACGACAAAGUGG ..((.((((....((..((...--.((((...((....((....))....))..))))...(....)...))..)).)))).))....... ( -18.20) >consensus AAGUGGUUGCCAGUGGAUCAGU__GGUUCGGGUGAAGGUCGAAAGAAGAGCGAAGAGCGAGCGGAAGGAAGAAACGACGACGACAAAGUGG ..((.((((((...(((((.....))))).)))....((((........((.....))...(....).......))))))).))....... (-19.10 = -19.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:22 2006