Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,173,879 – 9,173,973 |
Length | 94 |
Max. P | 0.725043 |
Location | 9,173,879 – 9,173,973 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -25.40 |
Energy contribution | -25.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 1.00 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9173879 94 + 22224390 AGUAGUAGUAAAGCAUGCUGAGAGCGCGAGCACAAAAGCUGCUGCAGAGUUAACAUCUGGAUGUUAAAACUUAACUUCUCGGUUAACUGACGGU .((((((((..((....))....((....))......))))))))..(((((((....(((.((((.....)))).)))..)))))))...... ( -25.40) >DroSec_CAF1 1743 94 + 1 AGUAGUAGUAAAGCAUGCUGAGAGCGCGAGCACAAAAGCUGCUGCAGAGUUAACAUCUGGAUGUUAAAACUUAACUUCUCGGUUAACUGACGGU .((((((((..((....))....((....))......))))))))..(((((((....(((.((((.....)))).)))..)))))))...... ( -25.40) >DroSim_CAF1 1743 94 + 1 AGUAGUAGUAAAGCAUGCUGAGAGCGCGAGCACAAAAGCUGCUGCAGAGUUAACAUCUGGAUGUUAAAACUUAACUUCUCGGUUAACUGACGGU .((((((((..((....))....((....))......))))))))..(((((((....(((.((((.....)))).)))..)))))))...... ( -25.40) >consensus AGUAGUAGUAAAGCAUGCUGAGAGCGCGAGCACAAAAGCUGCUGCAGAGUUAACAUCUGGAUGUUAAAACUUAACUUCUCGGUUAACUGACGGU .((((((((..((....))....((....))......))))))))..(((((((....(((.((((.....)))).)))..)))))))...... (-25.40 = -25.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:21 2006