Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,172,786 – 9,172,896 |
Length | 110 |
Max. P | 0.983496 |
Location | 9,172,786 – 9,172,896 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.16 |
Mean single sequence MFE | -50.34 |
Consensus MFE | -22.56 |
Energy contribution | -24.92 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.24 |
Mean z-score | -2.31 |
Structure conservation index | 0.45 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9172786 110 + 22224390 AAUACGGCCACUCCGCCGCGCAAUGCCGGCUGAUAGCCGCCGCCUCCAGUGGCGGGAUUACUGG---CUGUCACGCUAGCUAAACUGCCACUGCUGCCGGCUGCUCCAACCGC------- ....(((....((.((((.((...)))))).)).(((.((((.(..(((((((((..(..((((---(......)))))..)..)))))))))..).)))).)))....))).------- ( -46.90) >DroVir_CAF1 659 120 + 1 AAAACUGGAACGCCACCGCGCAGCUGCGGCUGAUAGCCGCCAGAUCCGGAACUGGCAUUGCUGGAAGCUGGCACAUUGGCAAUGCUACCGCUGCUACCCGAAGCUGCAGCUGCACCAACA .....(((...((....))((((((((((((..((((.(((((........)))))...((.((.(((..((......))...))).)))).)))).....)))))))))))).)))... ( -50.30) >DroSec_CAF1 674 110 + 1 AAUACGGCCACUCCGCCGCGCAAUGCCGGCUGAUAGCCGCCGCCUCCAGUGGCGGGAUUACUGG---CUGUCACGCUAGCUAAACUGCCACUGCUGCCGGCUGCUCCAGCCGC------- ....((((......))))........((((((..(((.((((.(..(((((((((..(..((((---(......)))))..)..)))))))))..).)))).))).)))))).------- ( -52.20) >DroSim_CAF1 674 110 + 1 AAUACGGCCACUCCGCCGCGCAAUGCCGGCUGAUAGCCGCCGCCUCCAGUGGCGGGAUUACUGG---CUGUCACGCUAGCUAAACUGCCACUGCUGCCGGCUGCUCCAGCCGC------- ....((((......))))........((((((..(((.((((.(..(((((((((..(..((((---(......)))))..)..)))))))))..).)))).))).)))))).------- ( -52.20) >DroMoj_CAF1 724 117 + 1 AAGACUGCCACGCCGCCACGCAACUGGGGCUGAUAGCCGCCGGACACAGGGCCGGCAUUGCUGG---UUGGCAUGUUGGCGAUGCUGCCGCUGCUGCCAGACUGGGCGCUCGCUCCGGCG ....(((.((.(((.(((......)))))))).))).(((((((.....(((.(((((((((..---(......)..))))))))))))((.((.(((......)))))..))))))))) ( -50.10) >consensus AAUACGGCCACUCCGCCGCGCAAUGCCGGCUGAUAGCCGCCGCCUCCAGUGGCGGGAUUACUGG___CUGUCACGCUAGCUAAACUGCCACUGCUGCCGGCUGCUCCAGCCGC_______ ....((((......))))........((((((...((.((((....(((((((((.....((((...........)))).....)))))))))....)))).))..))))))........ (-22.56 = -24.92 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:19 2006