Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,160,889 – 9,160,982 |
Length | 93 |
Max. P | 0.996523 |
Location | 9,160,889 – 9,160,982 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 88.16 |
Mean single sequence MFE | -30.66 |
Consensus MFE | -24.60 |
Energy contribution | -25.48 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.05 |
Mean z-score | -2.96 |
Structure conservation index | 0.80 |
SVM decision value | 2.71 |
SVM RNA-class probability | 0.996523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9160889 93 - 22224390 AUGGUAUAAAACGCGAGUAACUGCAUACAAGCCAGCGACCAACUGCAUAAAUAUGGCGACUGGCGGCCGACGGAAAUGGCCGUCGCGGUUGCA ................((((((((......(((((((.(((............))))).)))))....(((((......))))))))))))). ( -34.40) >DroSec_CAF1 2033 90 - 1 AUGGCAUAAAACGCGAGUAACUGCAUACAAGCUAGCGACCAACUGCAUAAAUAUGGCGACUGG---CCGACGGAAAUGGCCGUCGCGGUUGCA ...((.......))..((((((((......(((((((.(((............))))).))))---).(((((......))))))))))))). ( -31.90) >DroSim_CAF1 3982 85 - 1 AUGGCAUAAAACGCGAGUAACUGCAUACA-----GCGACCAACUGCAUAAAUAUGGCGACUGG---CCGACGGAAAUGGCCGUCGCGGUUGCA ...(((....((....))...))).....-----((((((.....(((....)))(((((.((---(((.......)))))))))))))))). ( -30.90) >DroEre_CAF1 2843 80 - 1 --------AA--GCGAGUAACUACAUACAAACCAGCGACCAACUGCAUAAAUAUGGCGACUGG---CCGACGGAAAUGGCCGUCGCGGUUGCA --------..--....(((......)))......((((((.....(((....)))(((((.((---(((.......)))))))))))))))). ( -26.80) >DroYak_CAF1 2154 82 - 1 --------AAACGCGAGUAACUACAUGCAAACCAGCGACCAACUGCAUAAAUAUGGCGACUGG---CCGACGGAAAUGGCCGUCGCGGUUGCA --------....(((.((....)).)))......((((((.....(((....)))(((((.((---(((.......)))))))))))))))). ( -29.30) >consensus AUGG_AUAAAACGCGAGUAACUGCAUACAAACCAGCGACCAACUGCAUAAAUAUGGCGACUGG___CCGACGGAAAUGGCCGUCGCGGUUGCA ................((((((((.......((((((.(((............))))).)))).....(((((......))))))))))))). (-24.60 = -25.48 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:16 2006