Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,147,190 – 9,147,293 |
Length | 103 |
Max. P | 0.906753 |
Location | 9,147,190 – 9,147,293 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 78.87 |
Mean single sequence MFE | -48.00 |
Consensus MFE | -36.24 |
Energy contribution | -38.64 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.13 |
Mean z-score | -1.83 |
Structure conservation index | 0.76 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906753 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9147190 103 - 22224390 UGGGCGUGGUGGGCGUGCGGAUGAUGGGCGUGGCUGUGGUAGUAGGCAGCCGCCGAACUCGAGGAUCCAUUUGUCCAUUCGCCGGCGCCCAUCAUUUCGGCUG--------------- ..((((((((((((((.(((..(((((((((((((((........))))))))((....))...........)))))))..))))))))))))))....))).--------------- ( -49.70) >DroPse_CAF1 1649 115 - 1 UGGGCGUGGUGGGCGUGUGGAUGGUGGGCAUGGCUGUGGUAGUAGGCGGCUGCGGAGCUCGAGGAUCC---CGUCCAUUCCCCGGCGCCCAUCAGAUCGGUUUCUGCAGAGAGAGAGA (((((((.(.(((...(((((((((((((.(.((.((.((.....)).)).)).).)))))......)---))))))).)))).))))))).....((..(((((....)))))..)) ( -47.60) >DroSec_CAF1 1 101 - 1 UGGGCGUGGUGGGCGUGCGGGUGGUGGGCGUGGCUGUGGUAGUAGGCAGCCGCCGAACUCGAGGAUCCAUUCGUCCAUUCGCCGGCGCCCAUCAUUUCGGC----------------- ..((.(((((((((..((.((((((((((((((((((........)))))))).......(((......)))))))).))))).))))))))))).))...----------------- ( -48.70) >DroEre_CAF1 1 83 - 1 UGU---------------GGAUGGUGGGCGUGGCUGUGGUAAUAUGCAGCCGCCGAGCUCGAGGAUCC---CGUCCAUUCGCCGGCGCCCAUCAUGUCGGC----------------- .((---------------.((((((((((..(((((((......)))))))((((.((....((((..---.))))....))))))))))))))..)).))----------------- ( -39.50) >DroYak_CAF1 1 100 - 1 UGUGCGUGGUGGGCGUGCGGGUGGUGGGCGUGGCUGUGGUAAUAGGCAGCCGCCGAACUCGAGGAUCC---CGUCCAUUCGCCGGCGCCCAUCAUGUCGGCUC--------------- .(((((((((((((((((((((((((((.((((((((........))))))))((....)).....))---)).))))))))..)))))))))))))..))..--------------- ( -54.50) >consensus UGGGCGUGGUGGGCGUGCGGAUGGUGGGCGUGGCUGUGGUAGUAGGCAGCCGCCGAACUCGAGGAUCC___CGUCCAUUCGCCGGCGCCCAUCAUGUCGGCU________________ .....(((((((((((.(((..(((((((((((((((........))))))))((....))...........)))))))..))))))))))))))....................... (-36.24 = -38.64 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:56 2006