Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,132,547 – 9,132,640 |
Length | 93 |
Max. P | 0.999995 |
Location | 9,132,547 – 9,132,640 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 68.20 |
Mean single sequence MFE | -23.41 |
Consensus MFE | -14.91 |
Energy contribution | -16.13 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.12 |
Mean z-score | -2.71 |
Structure conservation index | 0.64 |
SVM decision value | 5.90 |
SVM RNA-class probability | 0.999995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9132547 93 - 22224390 AAAGGGGAACGACUCGUGCGUUGAUAUCAAUAACAAUUAUUGAUAUCAAUUUACGCAUAUUCCGACGGCGAUGCCAGUCC-CAUCUUCACU-GGC ...((((((.....((((.(((((((((((((.....))))))))))))).))))....))))((((((...))).))))-).........-... ( -28.90) >DroVir_CAF1 606 77 - 1 CAAGG--CGAGACUCGUGCGUUGAUAUUAAAACCAAUAACUGAUAUCAAUUUACU-----UCCAU-----------UCUCCUCGCAUCAUCGAAU ....(--((((....(((.((((((((((...........)))))))))).))).-----.....-----------....))))).......... ( -14.14) >DroSec_CAF1 1393 93 - 1 AAAGGGGAACGACUCGUGCGUUGAUAUCAAUAACAAUUAUUGAUAUCAAUUUACGCAUAUUCCGACGCCGUUGCCAGUCC-CAUCUUCAUU-GGU ....((.((((.((((((((((((((((((((.....)))))))))))....))))).....))).).)))).))....(-((.......)-)). ( -27.20) >consensus AAAGGGGAACGACUCGUGCGUUGAUAUCAAUAACAAUUAUUGAUAUCAAUUUACGCAUAUUCCGACG_CG_UGCCAGUCC_CAUCUUCAUU_GGU ...(((((.......(((.(((((((((((((.....))))))))))))).))).........(((..........)))....)))))....... (-14.91 = -16.13 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:54 2006