Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 133,067 – 133,176 |
Length | 109 |
Max. P | 0.992625 |
Location | 133,067 – 133,176 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 95.23 |
Mean single sequence MFE | -35.56 |
Consensus MFE | -32.66 |
Energy contribution | -32.62 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.92 |
SVM decision value | 2.34 |
SVM RNA-class probability | 0.992625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 133067 109 - 22224390 CAGCAAUAUUGACGCAUGGGCGCCGUAUUGAUUUUUUACUGCGUCGACGUCGGAAUCACUCCAUGGGGUGGUUUGUCGUUCUUUCUCUUUUCUGCCAGAUAGUGCCUUC ..(((.((((...(((..(((((.(((.........))).)))))((((.((.((((((((....)))))))))).))))............)))..)))).))).... ( -31.40) >DroSec_CAF1 5354 109 - 1 CAGCGAUAUUGACGCAUGGGCGCAGUAUUGAUUUUUUACUGCGUCGACGUCGGAAUCACUCCAUGGGGUGGUUUGUCGUUCUUUCUCUUUUCUGCCAGAUAGUGCCUUC ..(((.((((...(((..(((((((((.........)))))))))((((.((.((((((((....)))))))))).))))............)))..)))).))).... ( -35.30) >DroSim_CAF1 5116 109 - 1 CAGCGAUAUUGACGCAUGGGCGCAGUAUUGAUUUUUUACUGCGUCGACGUCGGAAUCACUCCAUGGGGUGGUUUGUCGUUCUUUCUCUUUUCUGCCAGAUAGUGCCUUC ..(((.((((...(((..(((((((((.........)))))))))((((.((.((((((((....)))))))))).))))............)))..)))).))).... ( -35.30) >DroEre_CAF1 4689 109 - 1 CAGCGAUGUCGACGCAUGGGCGCAGUAUUGAUUUUUCACUGCGUCGACGUCGGAAUCACUCCAUGGGGUGGUUUGUCGUUCUUUCUCUUUUCGGCCUGAUAUUGCCUUC ..((((((((((((..(.((((((((...((....)))))))))).))))).(((((((((....)))))))))((((.............))))..)))))))).... ( -39.62) >DroYak_CAF1 4886 109 - 1 CAGCGAUGUCGACGCAUGGGCGCAGUAUUGAUUUUUCACUGCGUCGACGUCGGAAUCACUCCGUGGGGUGGUUUGUCGUUCCUUCUCUUUUCGCCCAGAUAGUGCCUUC ...((((((((((((....))(((((...((....)))))))))))))))))(((((((((....)))))))))................................... ( -36.20) >consensus CAGCGAUAUUGACGCAUGGGCGCAGUAUUGAUUUUUUACUGCGUCGACGUCGGAAUCACUCCAUGGGGUGGUUUGUCGUUCUUUCUCUUUUCUGCCAGAUAGUGCCUUC ..(((.((((((((..(.(((((((((.........))))))))).))))).(((((((((....))))))))).......................)))).))).... (-32.66 = -32.62 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:54 2006