Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,001,059 – 9,001,163 |
Length | 104 |
Max. P | 0.688402 |
Location | 9,001,059 – 9,001,163 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -24.73 |
Consensus MFE | -17.34 |
Energy contribution | -16.90 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -2.87 |
Structure conservation index | 0.70 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9001059 104 + 22224390 CAG-CAUGUGUGU------GCGUGUAGAUGUGACAGCUGCACAUCCUCACAAAAGAGAAUGCCAAAGGAAAAAGAAAAUAAAAAGCAAUUAUGCAAUAACAUACGGGAAAA ...-..(((((((------..(((..((((((.(....)))))))..)))..................................(((....)))....)))))))...... ( -21.10) >DroSec_CAF1 1689 104 + 1 CAG-CAUGUGUGU------GCGUGUAGAUGUGACAGCUGCACAUUCUCACAAAAGAGAAUGCCAAAGGAAAAAGAAAAUAAAAAGCAAUUAUGCAAUAACAUGCGGGAAAA ..(-(((((...(------((((((((.((...)).))))))((((((......))))))................................)))...))))))....... ( -26.90) >DroEre_CAF1 1829 103 + 1 CAG-CAUGUGUGU------GUGUGUAGAUGUGACAGCUGCACAUCCUCACAAAAGAGAAUGCCAAAGGAAAAAGAAAAUAA-AAACAAUUAUGCAAUAACAUGCGGGAAAA ..(-(((((.(((------(((((..((((((.(....)))))))..)))...........((...)).............-........)))))...))))))....... ( -23.20) >DroYak_CAF1 1759 111 + 1 CAACCAUGUGUGUGUGUGCGUGUGUAGAUGUGACAGCUGCACAUCCUCACAAAAGAGAAUGCCGAAGGAAAAGGAAAAUAAAAAACAAUUAUGCAAUAACAUGCGGGAAAA ...((.(((((((...((((((((..((((((.(....)))))))..)))...........((.........))................)))))...))))))))).... ( -27.70) >consensus CAG_CAUGUGUGU______GCGUGUAGAUGUGACAGCUGCACAUCCUCACAAAAGAGAAUGCCAAAGGAAAAAGAAAAUAAAAAACAAUUAUGCAAUAACAUGCGGGAAAA ....(((((.(((......(((((..((((((.(....)))))))..)))...........((...))................))......)))...)))))........ (-17.34 = -16.90 + -0.44)
Location | 9,001,059 – 9,001,163 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -21.71 |
Consensus MFE | -16.27 |
Energy contribution | -15.65 |
Covariance contribution | -0.62 |
Combinations/Pair | 1.19 |
Mean z-score | -2.29 |
Structure conservation index | 0.75 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9001059 104 - 22224390 UUUUCCCGUAUGUUAUUGCAUAAUUGCUUUUUAUUUUCUUUUUCCUUUGGCAUUCUCUUUUGUGAGGAUGUGCAGCUGUCACAUCUACACGC------ACACACAUG-CUG .......((((((...(((.....((((....................)))).........(((.((((((((....).))))))).)))))------)...)))))-).. ( -24.05) >DroSec_CAF1 1689 104 - 1 UUUUCCCGCAUGUUAUUGCAUAAUUGCUUUUUAUUUUCUUUUUCCUUUGGCAUUCUCUUUUGUGAGAAUGUGCAGCUGUCACAUCUACACGC------ACACACAUG-CUG .......((((((...((((((..((((....................))))(((((......)))))))))))(((((.......))).))------....)))))-).. ( -22.45) >DroEre_CAF1 1829 103 - 1 UUUUCCCGCAUGUUAUUGCAUAAUUGUUU-UUAUUUUCUUUUUCCUUUGGCAUUCUCUUUUGUGAGGAUGUGCAGCUGUCACAUCUACACAC------ACACACAUG-CUG .......(((......)))..........-..................(((((.......((((.((((((((....).))))))).)))).------......)))-)). ( -21.14) >DroYak_CAF1 1759 111 - 1 UUUUCCCGCAUGUUAUUGCAUAAUUGUUUUUUAUUUUCCUUUUCCUUCGGCAUUCUCUUUUGUGAGGAUGUGCAGCUGUCACAUCUACACACGCACACACACACAUGGUUG ........(((((...(((.........................(....)..........((((.((((((((....).))))))).)))).))).......))))).... ( -19.20) >consensus UUUUCCCGCAUGUUAUUGCAUAAUUGCUUUUUAUUUUCUUUUUCCUUUGGCAUUCUCUUUUGUGAGGAUGUGCAGCUGUCACAUCUACACAC______ACACACAUG_CUG .......((((((....(((....))).................................((((.((((((((....).))))))).))))...........))))).).. (-16.27 = -15.65 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:01 2006