Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,998,873 – 8,998,989 |
Length | 116 |
Max. P | 0.650024 |
Location | 8,998,873 – 8,998,989 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 86.58 |
Mean single sequence MFE | -35.50 |
Consensus MFE | -22.05 |
Energy contribution | -22.67 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.28 |
Mean z-score | -2.26 |
Structure conservation index | 0.62 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8998873 116 - 22224390 CGUGCUCCUUCUUCUCCAAAUCCGGGUCCACCUCUUCGUUUUGGAAGGAGGGAAUACCACCGGGCGGCCGUUGUCGCCUGUCCGCCUGCAACAUCCGCCACCAACCACUCCAACAA .(((.((((((((.((((((...(((....)))......)))))))))))))).))).....(((((..(((((.((......))..)))))..)))))................. ( -36.10) >DroSec_CAF1 10652 116 - 1 CGUGCUCCUUCUCCUUAAAAUCCGGAUCCACCUCUUCGAUUUGGAAGGAGGGAAUACCACCGGGCGGCCGUUGUUGCCUGUCCGCCUGCAACAUCCGCCACCAACCACUCCAACAA .(((.(((..(((((.....((((((((.........)))))))))))))))).))).....(((((..(((((.((......))..)))))..)))))................. ( -34.40) >DroEre_CAF1 10774 113 - 1 CGUGCUUCUUGCCCUCCGAAUCCGGGUCCACCUCUUCGAUUUGGAAG---GGCAUUCACCCGGGCGGCCGACAUCGCCUGUCCGCCUGCAACAUCCGCCACCAACAACUCCAACAA ..(((....(((((((((((((.(((....)))....))))))).))---))))......(((((((.((....)).)))))))...))).......................... ( -36.20) >DroYak_CAF1 12377 113 - 1 CAUGGAUCUUGCCCUCCAAAUCCGGGUCCACCUCUUCGAUUUGGAAG---GGAAUUCCCCCGGGCAGCUGUCGUCGUCUGUCCGUCUGCAACAUCCGCCACCAACCACUCCAACAA ...((((.((((..((((((((.(((....)))....)))))))).(---((....))).(((((((.((....)).)))))))...)))).)))).................... ( -35.30) >consensus CGUGCUCCUUCCCCUCCAAAUCCGGGUCCACCUCUUCGAUUUGGAAG___GGAAUACCACCGGGCGGCCGUCGUCGCCUGUCCGCCUGCAACAUCCGCCACCAACCACUCCAACAA ..(((.((((((..((((((((.(((......)))..)))))))).))))))........(((((((.((....)).)))))))...))).......................... (-22.05 = -22.67 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:55 2006