Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,996,014 – 8,996,134 |
Length | 120 |
Max. P | 0.640022 |
Location | 8,996,014 – 8,996,134 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.31 |
Mean single sequence MFE | -59.92 |
Consensus MFE | -51.44 |
Energy contribution | -52.00 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.64 |
Structure conservation index | 0.86 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8996014 120 - 22224390 AGCUGCUCCGGCCGCUGGAGCCACCUCAGGCGGCGGUGUGGGUGUCGGCACCGGUGUGGGCACCUUGCCGGGCUGGGCCACCACUUUGGCGGGUUCCGUUUUGGGUGGCUCGACUAGCGU .(((((.((.((((((.(((....))).))))))((((.(((((((.(((....))).)))))))))))))))(((((((((.(...(((((...)))))..))))))))))...))).. ( -62.80) >DroSec_CAF1 7789 120 - 1 AGCUGCUCCGGCCGCUGGAGCCACCUCAGGCGGCGGUGUGGGUGUCGGCACCGGAGUGGGCACCUUGCCGGGCUGGGCCACCACUUUGGCGGGUUCCGUUUUUGGUGGCUCGACUAGCGU .(((((.((.((((((.(((....))).))))))((((.(((((((.((......)).)))))))))))))))((((((((((....(((((...)))))..))))))))))...))).. ( -61.40) >DroEre_CAF1 7937 120 - 1 AGCUGCUCCGGCUGCUGGAGCUACCUCAGGUGGCGGUGUGGGUGUCGGAACUGGUGUGGGCACCUUCCCGGGCUGGACCACCACUUUGGGUGGUUCCGUUUUAGGUGGCUCGACUAGCGU .((((.((.(((..((((((((((((.((((((.(((.(.(((.(.((((..((((....)))))))).).))).)))).)))))).))))))))))......))..))).)).)))).. ( -58.40) >DroYak_CAF1 9543 120 - 1 AGCUGCUCCGGCCGCUGGAGCUACCUCAGGUGGCGGUGUGGGUGUCGGAACUGGAGUGGGCACCUUGCCGGGCUGGGCCACCACUUUGGGGGGUUCCGUUUUAGGUGGCUCGACUAGCGU .((((.((.((((((((((((..(((.(((((((((((.(((((((...((....)).))))))))))))(((...))).)))))).)))..)))))......))))))).)).)))).. ( -57.10) >consensus AGCUGCUCCGGCCGCUGGAGCCACCUCAGGCGGCGGUGUGGGUGUCGGAACCGGAGUGGGCACCUUGCCGGGCUGGGCCACCACUUUGGCGGGUUCCGUUUUAGGUGGCUCGACUAGCGU .(((((.((.((((((.(((....))).))))))((((.(((((((.((......)).)))))))))))))))(((((((((....(((......))).....)))))))))...))).. (-51.44 = -52.00 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:50 2006