Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,951,277 – 8,951,380 |
Length | 103 |
Max. P | 0.979013 |
Location | 8,951,277 – 8,951,380 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 93.20 |
Mean single sequence MFE | -25.07 |
Consensus MFE | -24.28 |
Energy contribution | -24.17 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.48 |
Structure conservation index | 0.97 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8951277 103 + 22224390 AACGUUUAACUUAAUGUGGUGGAAAUUGAAGCCUUCUCGCUGUACAAUCACCCACAUAUAAGAAGCUAAUGGUUAUUUCCCUUACGAGGACACCAUUACCAAC .........((((((((((.(...((((.(((......)))...))))..))))))).))))..(.(((((((....((((....).))).))))))).)... ( -22.20) >DroSec_CAF1 1550 103 + 1 AACGUUUAACAUAAUGUGGUGGAAAUUGAAGCCUUCUAGCUGUACCAUCAGCCACAUAUAUGAAGCUAAUGGUUAUUUCCUUUACGAGGAUACCAUUACCAAC .........(((((((((((.((......(((......)))......)).))))))).))))..(.(((((((....(((((...))))).))))))).)... ( -27.20) >DroSim_CAF1 1552 103 + 1 AAAUUAUAACAUAAUGUGGUGGAAAUUGAAGCCUUCUAGCUGUACGAUCAGCCACAUAUAUGAAGCUAAUGGUUAUUUCCUUUACGAGGACACCAUUACCAAC .........(((((((((((.((......(((......)))......)).))))))).))))..(.(((((((....(((((...))))).))))))).)... ( -25.80) >consensus AACGUUUAACAUAAUGUGGUGGAAAUUGAAGCCUUCUAGCUGUACAAUCAGCCACAUAUAUGAAGCUAAUGGUUAUUUCCUUUACGAGGACACCAUUACCAAC .........((((((((((..((......(((......)))......))..)))))).))))..(.(((((((....((((.....)))).))))))).)... (-24.28 = -24.17 + -0.11)
Location | 8,951,277 – 8,951,380 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 93.20 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -25.86 |
Energy contribution | -25.20 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.07 |
Mean z-score | -2.24 |
Structure conservation index | 0.93 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8951277 103 - 22224390 GUUGGUAAUGGUGUCCUCGUAAGGGAAAUAACCAUUAGCUUCUUAUAUGUGGGUGAUUGUACAGCGAGAAGGCUUCAAUUUCCACCACAUUAAGUUAAACGUU ((((.(((((((.(((.(....))))....))))))).)..((((.((((((..(((((...(((......))).)))))....))))))))))...)))... ( -30.50) >DroSec_CAF1 1550 103 - 1 GUUGGUAAUGGUAUCCUCGUAAAGGAAAUAACCAUUAGCUUCAUAUAUGUGGCUGAUGGUACAGCUAGAAGGCUUCAAUUUCCACCACAUUAUGUUAAACGUU ..((((.((((.....))))...((((((.((((((((((.((....)).))))))))))..((((....))))...))))))))))................ ( -26.80) >DroSim_CAF1 1552 103 - 1 GUUGGUAAUGGUGUCCUCGUAAAGGAAAUAACCAUUAGCUUCAUAUAUGUGGCUGAUCGUACAGCUAGAAGGCUUCAAUUUCCACCACAUUAUGUUAUAAUUU ...(.(((((((.((((.....))))....))))))).)..((((.((((((..((......((((....))))......))..))))))))))......... ( -26.40) >consensus GUUGGUAAUGGUGUCCUCGUAAAGGAAAUAACCAUUAGCUUCAUAUAUGUGGCUGAUCGUACAGCUAGAAGGCUUCAAUUUCCACCACAUUAUGUUAAACGUU ...(.(((((((.((((.....))))....))))))).)..((((.((((((..((......(((......)))......))..))))))))))......... (-25.86 = -25.20 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:07 2006