Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,949,322 – 8,949,414 |
Length | 92 |
Max. P | 0.810471 |
Location | 8,949,322 – 8,949,414 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 85.33 |
Mean single sequence MFE | -29.20 |
Consensus MFE | -23.30 |
Energy contribution | -22.80 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.37 |
Mean z-score | -1.81 |
Structure conservation index | 0.80 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8949322 92 - 22224390 GAUGGUUUGAUUGCUCUUCACGUGCGCAUCCAUGCGGGAGAAGGUAUAAGCCGAGGGAGCAAGGAUACUGGCUUCCGGAUCUAGAAUAUAAU (((((((((..(((.((((.(.((((......)))).).)))))))))))))..((((((.((....)).))))))..)))........... ( -28.10) >DroSec_CAF1 13746 92 - 1 GAUGGUUUGAUUGCUCUCCACGUGCGAAUCCAUGCGGGAGCAGGUAUAAGCCGAGGGAGCGACGGUACUUGCUUCCAGAUCUAGAAUAUAAU (((((((((.((((((.((.((((......)))).))))))))...))))))..((((((((......))))))))..)))........... ( -32.70) >DroSim_CAF1 13192 91 - 1 GAUGGUUUGAUUGCUCUCCACGUGCGCAUCCAUGCGGGAGAAGGUAUAAGCCGAGGAAGC-AGGGUACUUGCUUUCAGAUCUAGAAUAUAAU ((((((((((((..(((((.(((..(....)..)))))))).))).))))))..((((((-(((...)))))))))..)))........... ( -27.10) >DroYak_CAF1 12937 92 - 1 GAUGGUUGGAUUGCCUUGUACGUGCGCAUCUAUGCGGGUAAUGGUACAAGCCGGGGGAGUAAGAGUAUUUGCUUCCCGAUCUAUAAUAAAAU (((((((....((((...(((.((((......)))).)))..))))..)))).((((((((((....)))))))))).)))........... ( -28.90) >consensus GAUGGUUUGAUUGCUCUCCACGUGCGCAUCCAUGCGGGAGAAGGUAUAAGCCGAGGGAGCAAGGGUACUUGCUUCCAGAUCUAGAAUAUAAU (((((((((..((((((((.(((..(....)..)))))))..))))))))))..(((((((((....)))))))))..)))........... (-23.30 = -22.80 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:03 2006