Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,931,898 – 8,932,014 |
Length | 116 |
Max. P | 0.572312 |
Location | 8,931,898 – 8,932,014 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.23 |
Mean single sequence MFE | -35.72 |
Consensus MFE | -22.14 |
Energy contribution | -22.34 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.43 |
Mean z-score | -1.64 |
Structure conservation index | 0.62 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8931898 116 + 22224390 UUCUUCCAGAACAAUCUCGACAAGAGCGAGUUCAUCAGGAAGCAGGCGAAGAAGGCCAAGAAUGCGGAAAAG---GC-UCUGGCUGCCAAGAGCGACAGCGAUGCCUGAGUUCGCGCUAG ....(((.((((...(((.....)))...))))....)))(((.(((.......)))......(((((..((---((-..(.((((.(......).)))).).))))...)))))))).. ( -34.60) >DroSec_CAF1 3621 116 + 1 UUCUUCCAGAACAAUCUCAACAAGAGCGAGUUCAUCAAGAAGCAGGUGAAACAGGCCAAGAAAGCGGAAAAG---GC-UCUGGCUGCCAAGAGCGACAGCGAUGCCUGAGUUCGCGCUAG .((((...((((...(((.....)))...))))...))))(((.(((.......)))......(((((..((---((-..(.((((.(......).)))).).))))...)))))))).. ( -32.20) >DroEre_CAF1 3629 116 + 1 UUCUUCCAGAACAAUCUCGACAAGAGCGAGUUCAUCAAGAAGCAGGCCAAAAAGGCCAAGAAAGCGGAGAAG---GC-UCUGGCUGCCAAGGGCGAAAGCGGGGCCUGAGUCCGCGCUAG .((((...((((...(((.....)))...))))...))))(((.((((.....))))......(((((..((---((-((((.(((((...)))...))))))))))...)))))))).. ( -44.70) >DroYak_CAF1 3711 116 + 1 UUCUUCCAGAACAAUCUCGACAAGAGCGAGUUCAUCAAGAAGCAGGCCAAGAGGGCCAAGAAAGCGGAGAAG---GC-UCUGGCUGCCAAGGGCGAAAGCGAGGCCUAAGCUCGCGCUAG (((((...((((...(((.....)))...))))...)))))...((((.....)))).....(((((((.((---((-.((.((((((...)))...))).))))))...))).)))).. ( -40.50) >DroAna_CAF1 3519 116 + 1 UUCUUCCAGAACAACCUUGACAAGAGCGAGUUUCUCAAAAAGCAGGCCAAAAAGGCUAAAAAGUUGGACAAAAAAGCCACAAGUU----CGUGAAGCUACGCCUUACACAGGGGAUAUUC ..............(((((..(((.(((((((((.(........((((.....))))........((((.............)))----)).)))))).))))))...)))))....... ( -26.62) >consensus UUCUUCCAGAACAAUCUCGACAAGAGCGAGUUCAUCAAGAAGCAGGCCAAAAAGGCCAAGAAAGCGGAAAAG___GC_UCUGGCUGCCAAGAGCGACAGCGAGGCCUGAGUUCGCGCUAG ...((((.((((...(((.....)))...))))...........((((.....))))........))))..........((((((((.....)))...(((((.......)))))))))) (-22.14 = -22.34 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:55 2006