Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,903,485 – 8,903,586 |
Length | 101 |
Max. P | 0.999856 |
Location | 8,903,485 – 8,903,586 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 89.31 |
Mean single sequence MFE | -23.39 |
Consensus MFE | -21.22 |
Energy contribution | -21.10 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.91 |
Structure conservation index | 0.91 |
SVM decision value | 4.27 |
SVM RNA-class probability | 0.999856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8903485 101 + 22224390 UCGAGGUCACCUUUUGACCACUCGC--UCCUAUUUAUCUUCGAGAUCUUAAGAGUUCUCACAUCGCCACAUCGUUUCCUUAACCGAUCGGUGACCUUGACAGU (((((((((((..(((.........--..............((((.((....)).)))).............(((.....))))))..))))))))))).... ( -25.50) >DroSec_CAF1 17747 100 + 1 UCUAGGUCACCUUUCGCCCAGUCGCUCUCCUAUUUUUCUUCGAGAUCUUAAGAGUUCUCACAUCGCCAC-UCGUUUCCUUAACCGAUCGGUGACCUUGCC--U ...((((((((..(((.........................((((.((....)).))))..........-..(((.....))))))..))))))))....--. ( -21.60) >DroSim_CAF1 13688 100 + 1 UCUAGGUCACCUUUCGACCAGUCGCUCUCCUAUUUAGCUUGGAGAUCUUAAGAGUUCUCACAUCGCCAC-UCGUUUCCUUAACCGAUCGGUGACCUUGCC--U ...((((((((..(((...(((.(((((((..........)))))......((....)).....)).))-).(((.....))))))..))))))))....--. ( -26.60) >DroEre_CAF1 18172 98 + 1 UCUAGGUCACCUUUCGACCUUUC--UCUCCUAUUUAUCUUCGAGAUCUGAGCGGUUCUCACAUCGCCAC-UCGUUUCCUUAACCGAUUGGUGACCUUGCC--U ...((((((((..(((.....((--((..............))))...(((.(((.........))).)-))...........)))..))))))))....--. ( -26.74) >DroYak_CAF1 18418 98 + 1 UCUAGGUCACCUUUCGACCAGUC--UCUCCAAUUUAUCUUCGAGAUCUCAAGAGUUCUCACAUCGCCAC-UCGUUUCCUUAACCGACUGCUGACCUUGCC--U ...((((((.(..(((.......--................((((.((....)).))))..........-..(((.....))))))..).))))))....--. ( -16.50) >consensus UCUAGGUCACCUUUCGACCAGUCGCUCUCCUAUUUAUCUUCGAGAUCUUAAGAGUUCUCACAUCGCCAC_UCGUUUCCUUAACCGAUCGGUGACCUUGCC__U ...((((((((..(((.........................((((.((....)).)))).............(((.....))))))..))))))))....... (-21.22 = -21.10 + -0.12)
Location | 8,903,485 – 8,903,586 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 89.31 |
Mean single sequence MFE | -30.79 |
Consensus MFE | -23.24 |
Energy contribution | -23.84 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -3.29 |
Structure conservation index | 0.75 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8903485 101 - 22224390 ACUGUCAAGGUCACCGAUCGGUUAAGGAAACGAUGUGGCGAUGUGAGAACUCUUAAGAUCUCGAAGAUAAAUAGGA--GCGAGUGGUCAAAAGGUGACCUCGA ....((.((((((((.((((..........)))).((((.((.((....((((((..(((.....)))...)))))--))).)).))))...)))))))).)) ( -28.90) >DroSec_CAF1 17747 100 - 1 A--GGCAAGGUCACCGAUCGGUUAAGGAAACGA-GUGGCGAUGUGAGAACUCUUAAGAUCUCGAAGAAAAAUAGGAGAGCGACUGGGCGAAAGGUGACCUAGA .--....((((((((..(((.((..(....).(-((.((....((((....))))...((((............)))))).))))).)))..))))))))... ( -31.30) >DroSim_CAF1 13688 100 - 1 A--GGCAAGGUCACCGAUCGGUUAAGGAAACGA-GUGGCGAUGUGAGAACUCUUAAGAUCUCCAAGCUAAAUAGGAGAGCGACUGGUCGAAAGGUGACCUAGA .--....((((((((..(((..(..(....).(-((.((....((((....))))...(((((..........))))))).))))..)))..))))))))... ( -35.30) >DroEre_CAF1 18172 98 - 1 A--GGCAAGGUCACCAAUCGGUUAAGGAAACGA-GUGGCGAUGUGAGAACCGCUCAGAUCUCGAAGAUAAAUAGGAGA--GAAAGGUCGAAAGGUGACCUAGA .--....((((((((..(((..(..(....)((-((((...........))))))...((((..............))--))..)..)))..))))))))... ( -31.24) >DroYak_CAF1 18418 98 - 1 A--GGCAAGGUCAGCAGUCGGUUAAGGAAACGA-GUGGCGAUGUGAGAACUCUUGAGAUCUCGAAGAUAAAUUGGAGA--GACUGGUCGAAAGGUGACCUAGA .--....((((((.(((((......(....)((-((..(.......).))))......((((.((......)).))))--))))).((....))))))))... ( -27.20) >consensus A__GGCAAGGUCACCGAUCGGUUAAGGAAACGA_GUGGCGAUGUGAGAACUCUUAAGAUCUCGAAGAUAAAUAGGAGAGCGACUGGUCGAAAGGUGACCUAGA .......((((((((..(((((((.(....)....)))).....((((.((....)).)))).........................)))..))))))))... (-23.24 = -23.84 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:46 2006