Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,846,966 – 8,847,057 |
Length | 91 |
Max. P | 0.692374 |
Location | 8,846,966 – 8,847,057 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 78.46 |
Mean single sequence MFE | -38.05 |
Consensus MFE | -26.28 |
Energy contribution | -27.70 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.32 |
Mean z-score | -1.28 |
Structure conservation index | 0.69 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8846966 91 + 22224390 UACCAAGUCAUCGGUGGACACGGCUGAUUCACUGGACGAGGCCUCGACCAUGGCCACGUGUGGCUCACCCGGAGCCGCCGGUG--GCA---GUG-------GU .((((.(((((((((((...(((.(((..(((...(((.((((........)))).))))))..))).)))...)))))))))--)).---.))-------)) ( -47.20) >DroVir_CAF1 133488 83 + 1 CACCAAGUCAUCAGUAGACACCGCCGAUUCGCUCGAGGAAGCCUCCACCAUGGCCACCUGUGGCUCUCCGACGGCAGCCGCUG-------------------- ...........(((..(...(((.((....(((..(((..(((........)))..)))..)))....)).)))...)..)))-------------------- ( -21.00) >DroSim_CAF1 78970 91 + 1 CACCAAGUCAUCGGUGGACACGGCUGAUUCACUGGACGAGGCCUCGACAAUGGCCACGUGUGGCUCACCCGGAGCCGCCGGUG--GCA---GUG-------GU .((((.(((((((((((...(((.(((..(((...(((.((((........)))).))))))..))).)))...)))))))))--)).---.))-------)) ( -47.30) >DroEre_CAF1 82088 91 + 1 CACCAAGUCAUCGGUGGACACGGCUGAUUCACUCGACGAGGCCUCGACCAUGGCCACAUGUGGCUCACCCGGAGCCGCCGGUG--GCA---GCG-------GU .(((..(((((((((((...(((.(((..(((.....(.((((........)))).)..)))..))).)))...)))))))))--)).---..)-------)) ( -41.40) >DroYak_CAF1 84613 91 + 1 CACCAAGUCAUCGGUGGACACGGCCGAUUCACUGGACGAGGCAUCGACUAUGGCUACGUGUGGCUCGCCCGGUGGCGCCGGUA--GCA---GUG-------GU .((((.(..(((((((..(((((.(((..(((...(((((.(((.....))).)).))))))..))).)).))).))))))).--.).---.))-------)) ( -33.80) >DroMoj_CAF1 131612 103 + 1 CACCAAGUCGUCGGUGGACACGGCAGACUCGCUGGACGAAGCCUCCACGAUGGCCACCUGCGGCUCCCCAACGGCCGCCAAUGCGGCAGCUGCGGCAAACGCC ......(((((((.((((...(((....(((.....))).)))))))))))))).....((((((........(((((....)))))))))))(((....))) ( -37.60) >consensus CACCAAGUCAUCGGUGGACACGGCUGAUUCACUGGACGAGGCCUCGACCAUGGCCACGUGUGGCUCACCCGGAGCCGCCGGUG__GCA___GUG_______GU ........(((((((((...(((.(((..(((...(((.((((........)))).))))))..))).)))...))))))))).................... (-26.28 = -27.70 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:08 2006