Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,729,465 – 8,729,559 |
Length | 94 |
Max. P | 0.709220 |
Location | 8,729,465 – 8,729,559 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 70.77 |
Mean single sequence MFE | -14.67 |
Consensus MFE | -6.06 |
Energy contribution | -6.38 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.23 |
Mean z-score | -1.79 |
Structure conservation index | 0.41 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8729465 94 - 22224390 GCCCAAACAAAAGAACUAAUUGUUCUUGUGAGUUGGCAGUUUCAAAAAAAAAAAAAAAAAUGGGGGGGAACU--AAA-AAAACAGACAUGA-CAGAAA (((.(..((.((((((.....)))))).))..).)))((((((.......................))))))--...-.............-...... ( -14.20) >DroVir_CAF1 13077 89 - 1 UG--------CACAACUAAUUGUUGUUAUAUGUUGGCAAUUAAACCAAUCAUAAAGUGACUGAGGCGCAAAUGUCAAAAAAGAAAACAUUCGAC-UAU ((--------(....((....((..((.((((((((........)))).)))).))..))..))..)))...(((................)))-... ( -12.69) >DroSim_CAF1 10351 88 - 1 CCCCAAACAAAAGAACUAAUUGUUCUUGUGAGUUGGCAGUUUCAAAAAAAAAAAAAA-----GGGGGGAACU--AAA--AAACAGACAUGA-CAGAAA ((((......((((((.....)))))).((((........)))).............-----))))......--...--............-...... ( -15.00) >DroEre_CAF1 10008 84 - 1 CCCCACACAAAAGAACUAAUUGUUCUUGUGAGUUGGCAGUUUCACAAAAAAAAAG---------AAGGAACU--AAA--AAGCAGACAUGA-CAGAAU .....((((..(((((.....))))))))).(((.((((((((............---------..))))))--...--..)).)))....-...... ( -14.04) >DroYak_CAF1 10377 83 - 1 CGCCACACAAAAGAACUAAUUGUUCUUGUGAGUUGGCAGUUUCACAAUA-AAAAG---------AGGGAACU--AAA--AAGCAGACAUGA-CAGAAA .(((((.((.((((((.....)))))).)).).))))((((((.(....-....)---------..))))))--...--............-...... ( -17.40) >consensus CCCCAAACAAAAGAACUAAUUGUUCUUGUGAGUUGGCAGUUUCACAAAAAAAAAA________GGGGGAACU__AAA__AAGCAGACAUGA_CAGAAA .(((......((((((.....)))))).((((........)))).....................))).............................. ( -6.06 = -6.38 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:33 2006