Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,029,431 – 1,029,523 |
Length | 92 |
Max. P | 0.605050 |
Location | 1,029,431 – 1,029,523 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 80.21 |
Mean single sequence MFE | -17.49 |
Consensus MFE | -7.11 |
Energy contribution | -7.33 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.45 |
Mean z-score | -2.71 |
Structure conservation index | 0.41 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.605050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1029431 92 - 22224390 ACAUUAAAUACUACGGCACCGAUACUC--GGUGCCCACUAUACACACACAAACA---------AAAAAAAUGUCCGCAAUACACAGGCGUUUGUUAUCGAAAA ..............(((((((.....)--))))))...................---------....(((((((.(.......).)))))))........... ( -18.20) >DroPse_CAF1 6170 84 - 1 ACAUUAAAUUAUAUGGUACCAAUACUCUCAAUACUCACUACGG-----UAGA-A---------AAAAAAAA----GUAAUACAUAAUAAGGUGGUAGCACAUA .........(((.((.((((..((((........((((....)-----).))-.---------.......)----)))..((........)))))).)).))) ( -9.19) >DroSec_CAF1 1086 92 - 1 ACAUUAAAUUAUACGGCACCGAUACUC--GGUGCCCACUAUACACACACAAACA---------AAAAAAAUGUCCGCAAUACGCAGGCGUUUGUUAUCGCAAA ..............(((((((.....)--))))))...................---------....(((((((.((.....)).)))))))........... ( -22.30) >DroSim_CAF1 1087 92 - 1 ACAUUAAAUUAUACGGCACCGAUACUC--GGUGCCCACUAUACACACACAAACA---------AAAAAAAUGUCCGCAAUACGCAGGCGUUUGUUAUCGCAAA ..............(((((((.....)--))))))...................---------....(((((((.((.....)).)))))))........... ( -22.30) >DroEre_CAF1 1078 91 - 1 ACAUUAAAUUAUACGGCACCGAUACUC--GGUACCCACUAUACACACACAAACA----------AAAAAAAGUCAGUAAUACACAGGCGUUUGUUAUCGCAAA ..............((.((((.....)--))).))...............((((----------((.....(((.((.....)).))).))))))........ ( -12.50) >DroYak_CAF1 1081 101 - 1 ACAUUAAAUUAUACGGCACCGAUACUC--GGUGCCCACUAUACACACACAAACAGACAAACAAAAAAAAAAGUCAGUAAUACACAGGUGUUAGUUAUCGCAAA ..............(((((((.....)--)))))).((((.((((.........(((..............))).((.....))..))))))))......... ( -20.44) >consensus ACAUUAAAUUAUACGGCACCGAUACUC__GGUGCCCACUAUACACACACAAACA_________AAAAAAAAGUCCGCAAUACACAGGCGUUUGUUAUCGCAAA ..............((((((.........))))))....................................(((.((.....)).)))............... ( -7.11 = -7.33 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:52 2006