Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,685,215 – 8,685,324 |
Length | 109 |
Max. P | 0.505368 |
Location | 8,685,215 – 8,685,324 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -24.86 |
Consensus MFE | -18.38 |
Energy contribution | -18.90 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.21 |
Mean z-score | -1.62 |
Structure conservation index | 0.74 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505368 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8685215 109 + 22224390 UUUAAGUCGUGCAACAAAUUCAAUAAGCGAAAUCAUGCAGUUGCAAAUGCUCACUGCAGAUAAUGGUGUUCAAAGUGAGUACAAGUCAAAUUGCAGACCACGAAUUACU ..(((.(((((.......(((.......))).((.(((((((((...((((((((...((((....))))...))))))))...))..))))))))).))))).))).. ( -23.40) >DroSec_CAF1 121581 109 + 1 CUUAAGUCGUGCAACAAAUUCAAUAAGCGAAAUCAUGCAGAUGCAAAUGCUCACUGCAGAUAAUGGUGUUUAAAGUGAGUACAAGUCAAAUUGCAGACCACGAAUUACU ..(((.(((((......(((((.((((((..(((.(((((..((....))...)))))))).....))))))...)))))....(((........)))))))).))).. ( -23.60) >DroSim_CAF1 86335 109 + 1 CUUAAGUCGUGCAACAAAUUCAAUAAGCGAAAUCAUGCAGAUGCAAAUGCUCACUGCAGAUAAUGGUGUUUAAAGUGAGUACAAGUCAAAUUGCAGACCACGAAUUACU ..(((.(((((......(((((.((((((..(((.(((((..((....))...)))))))).....))))))...)))))....(((........)))))))).))).. ( -23.60) >DroEre_CAF1 133541 109 + 1 UUUUAGUCGUGCAACCAACUCAACUAGCGAAAUCUUACAGAUGCAAAUGUUCACCGCAGAUAAUGGUGCUUAAAGUGAGAACACGCCAAAUUGCACGCCACGAAUUACU .....(.(((((((............(((...((((((....((....)).(((((.......)))))......))))))...)))....))))))).).......... ( -19.49) >DroYak_CAF1 125292 109 + 1 UUUAGGUCGUGCAACAAAUUCAAUAAGCGAAAUCUUGCAAAUGCAAAUGUUCACUGCAGAUAAUGGUGUUUGCAGUGAGUGCAAGUCAAAUUGCAGGCCACGAAUUACU ....((((.(((((............((((....))))...((((....(((((((((((((....))))))))))))))))).......))))))))).......... ( -34.20) >consensus UUUAAGUCGUGCAACAAAUUCAAUAAGCGAAAUCAUGCAGAUGCAAAUGCUCACUGCAGAUAAUGGUGUUUAAAGUGAGUACAAGUCAAAUUGCAGACCACGAAUUACU ......(((((......(((((.((((((..(((.(((((..((....))...)))))))).....))))))...)))))....(((........))))))))...... (-18.38 = -18.90 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:20 2006